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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
1
binding sites
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
7
ChIP-seq
7
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
110
monocyte
66
heart
65
stomach
61
HeLa-S3
58
kidney
52
brain
51
muscle of arm
50
lung
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
45
H1-hESC
45
placenta
44
A549
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
neural progenitor cell
37
thymus
35
K562
35
retina
34
B cell
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
endothelial cell
31
renal cortex interstitium
31
renal pelvis
31
right kidney
30
fibroblast
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
23
macrophage
22
adipocyte
22
hepatocyte
22
smooth muscle cell
21
MCF-7
21
pericyte cell
20
adipose tissue
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
keratinocyte
18
foreskin keratinocyte
18
pancreas
17
T cell
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
cardiac muscle cell
16
islet of Langerhans
16
natural killer cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
ovary
15
psoas muscle
15
retinal pigment epithelial cell
14
astrocyte
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
pancreatic ductal cell
14
tibial nerve
14
transverse colon
13
body of pancreas
13
fibroblast of cardiac tissue
13
osteoblast
13
thyroid gland
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
coronary artery
12
excitatory neuron
12
fibroblast of lung
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
pancreatic beta cell
12
testis
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
endothelial cell of hepatic sinusoid
11
mammary gland epithelial cell
11
skeletal muscle myoblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
embryonic stem cell
10
endocrine pancreas
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
prostate gland
10
right renal pelvis
10
skeletal muscle tissue
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
skin fibroblast
9
tibial artery
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
breast epithelium
8
choroid plexus epithelial cell
8
fibroblast cell line
8
left cardiac atrium
8
pituitary stalk
8
right atrium auricular region
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
T-helper 17 cell
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
lower leg skin
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
omental fat pad
7
substantia nigra
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
ascending aorta
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
tongue
5
cardiac fibroblast
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
Disease term
4
neuroblastoma
Organ
8
brain
Life stage
4
child
2
young adult
Date released
4
September, 2022
2
February, 2021
1
May, 2021
1
October, 2022
Software used
4
r
2
encode-ccres
1
abc
1
chromhmm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
T-helper 17 cell
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR744HBG
released
Annotation file set
: Binding sites annotation for SK-N-SH (SK-N-SH) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR277GGH
released
Annotation file set
: Candidate regulatory elements for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR410LTV
released
Annotation file set
: Candidate regulatory elements for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR237PDC
released
Annotation file set
: Target gene predictions for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR022HYM
released
Annotation file set
: Target gene predictions for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955YDG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR096VBD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266GVV
released
Annotation file set
: enhancer-gene predicton of SK-N-SH-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP