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Schema
Citing CMDGA
Clear Filters
Annotation type
6
target gene predictions
1
gene expression
1
variant allelic effects
Annotation Category
cis-regulatory elements
6
Target gene links
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
6
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
2
ChIP-seq
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
7
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
23
heart
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
18
endothelial cell
17
adrenal gland
17
brain
17
epithelial cell of proximal tubule
17
lung
17
muscle of arm
17
small intestine
15
glomerular endothelial cell
15
kidney
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
liver
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
13
pancreatic ductal cell
11
adipose tissue
11
pancreatic delta cell
11
right kidney
11
right lung
11
smooth muscle cell
10
B cell
10
fibroblast
10
hematopoietic multipotent progenitor cell
10
macrophage
10
pancreatic acinar cell
10
pancreatic beta cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
hepatocyte
9
left kidney
9
pancreatic alpha cell
9
progenitor cell of endocrine pancreas
8
GM12878
8
H9
8
adipocyte
8
psoas muscle
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
dendritic cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
natural killer cell
7
sigmoid colon
7
trophoblast cell
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
T cell
6
body of pancreas
6
cardiomyocytes (cardiac muscle cell)
6
coronary artery
6
glomerular visceral epithelial cell
6
keratinocyte
6
kidney interstitial cell
6
mesenchymal stem cell
6
monocyte
6
mononuclear cell
6
neutrophil
6
olfactory receptor cell
6
ovary
6
pancreas
6
pancreatic stellate cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mammary gland epithelial cell
5
muscle of trunk
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neural progenitor cell
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
T-helper 17 cell
4
adult endothelial progenitor cell
4
astrocyte
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mesangial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
regulatory T cell
4
retina
4
right atrium auricular region
4
skeletal muscle fiber
4
skeletal muscle myoblast
4
tibial artery
4
vascular associated smooth muscle cell
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HCT116
3
HepG2
3
Mast Cell
3
Peyer's patch
3
SK-N-SH
3
Schwann cell
3
T-helper 1 cell
3
T-helper 2 cell
3
ascending aorta
3
basal cell
3
breast epithelium
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus
Organ
8
connective tissue
Life stage
1
adult
1
unknown
Date released
4
May, 2021
2
February, 2024
2
September, 2022
Software used
4
abc
3
r
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
4
Jesse Engreitz, Stanford University
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
annotation_category!
cis-regulatory elements
annotation_type_category!
RNA-seq
Showing 8 of 8 results
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Download
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP