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Citing CMDGA
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Annotation type
6
target gene predictions
1
gene expression
1
variant allelic effects
Annotation Category
cis-regulatory elements
6
Target gene links
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
6
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
2
ChIP-seq
1
snATAC-seq
1
snRNA-seq
Available data
7
bed bed3+
tsv
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
22
stomach
21
islet of Langerhans
19
A549
19
CD14-positive monocyte
19
HFFc6
19
brain
18
adrenal gland
18
liver
18
lung
18
small intestine
17
muscle of arm
16
kidney
16
placenta
15
macrophage
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
adipose tissue
13
endothelial cell
13
left lung
13
muscle of back
12
fibroblast
12
smooth muscle cell
11
monocyte
11
right kidney
11
right lung
10
B cell
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
hepatocyte
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
neutrophil
9
spinal cord
9
spleen
8
GM12878
8
H9
8
T cell
8
adipocyte
8
induced pluripotent stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
psoas muscle
7
CD8-positive, alpha-beta memory T cell
7
coronary artery
7
lymphocyte
7
mesenchymal stem cell
7
ovary
7
pancreas
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
body of pancreas
6
dendritic cell
6
heart right ventricle
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
pancreatic delta cell
6
regulatory T cell
6
subcutaneous adipose tissue
6
thyroid gland
6
tibial nerve
6
transverse colon
5
CD8-positive, alpha-beta T cell
5
caudate nucleus
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
mammary gland epithelial cell
5
muscle of trunk
5
neural progenitor cell
5
pancreatic acinar cell
5
pancreatic alpha cell
5
pancreatic beta cell
5
pancreatic ductal cell
5
right atrium auricular region
5
skeletal muscle myoblast
5
skeletal muscle tissue
5
tibial artery
4
CD4-positive helper T cell
4
CyT49
4
EndoC_BH1
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
astrocyte
4
cardiac muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
layer of hippocampus
4
putamen
4
retina
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
skin of body
4
substantia nigra
4
testis
4
type I muscle cell
4
type II muscle cell
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
blood cell
3
breast epithelium
3
cerebellum
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
epithelial cell of proximal tubule
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
immortal human breast epithelial cell line cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
myofibroblast cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
omental fat pad
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
prostate gland
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skin fibroblast
3
smooth muscle cell of the coronary artery
3
thoracic aorta
3
trophoblast
3
type B pancreatic cell
3
type II pneumocyte
3
upper lobe of left lung
3
uterus
3
vagina
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
Schwann cell
Organ
8
connective tissue
Life stage
1
adult
1
unknown
Date released
4
May, 2021
2
February, 2024
2
September, 2022
Software used
4
abc
3
r
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
4
Jesse Engreitz, Stanford University
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
annotation_category!
cis-regulatory elements
files.file_type!
tsv
Showing 8 of 8 results
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Download
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP