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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
2
differential activity
Annotation Category
6
Gene expression levels
6
cis-regulatory elements
4
Target gene links
1
Genetic variant effects
Annotation type Category
5
single cell RNA-seq
1
snRNA-seq
Available data
5
tsv
File set status
6
released
Genome assembly (visualization)
1
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
7
induced pluripotent stem cell
7
kidney
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
hepatocyte
4
endothelial cell
4
endothelial cell of hepatic sinusoid
4
pancreatic MUC5B+ductal cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic alpha+beta cell
4
pancreatic beta cell
4
pancreatic cycling alpha cell
4
pancreatic delta cell
4
pancreatic ductal cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic stellate cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
pancreatic quiescent stellate cell
2
EndoC_BH1
2
skeletal muscle fiber
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
T-helper 17 cell
1
adipocyte
1
alternatively activated macrophage
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
epithelial cell of proximal tubule
1
glial cell
1
glomerular endothelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
leukocyte
1
macrophage
1
mesenchymal stem cell
1
natural killer cell
1
neural cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal principal cell
1
skeletal muscle satellite cell
1
smooth muscle cell
1
subcutaneous adipose tissue
1
type I muscle cell
1
type II muscle cell
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
acute kidney failure
1
chronic kidney disease
Organ
6
connective tissue
Life stage
5
adult
Date released
5
September, 2023
1
February, 2024
Software used
4
r
2
deseq2
1
deeptools
1
samtools
1
umitools
Lab
5
KPMP
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
KPMP
1
AMP
RFA
5
KPMP
1
AMP2
lab.title!
AMP-T2D consortium
Showing 6 of 6 results
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Download
FileSet
DSR878WKF
released
Annotation file set
: Differential activity annotation of Fibroblast between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR507GDT
released
Annotation file set
: Differential activity annotation of Fibroblast between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR873OXC
released
Annotation file set
: Gene expression annotation of Fibroblast of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR593GLE
released
Annotation file set
: Gene expression annotation of Fibroblast of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR470XKF
released
Annotation file set
: Gene expression annotation of Fibroblast of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP