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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
2
target gene predictions
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
19
heart
19
stomach
18
A549
16
brain
16
lung
16
muscle of arm
15
small intestine
14
adrenal gland
14
fibroblast
14
kidney
14
placenta
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
13
muscle of leg
12
excitatory neuron
12
large intestine
11
B cell
11
right lung
11
thymus
10
endothelial cell
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
macrophage
9
renal cortex interstitium
9
renal pelvis
8
T cell
8
astrocyte
7
CD8-positive, alpha-beta memory T cell
7
liver
7
smooth muscle cell
7
spinal cord
6
K562
6
adipose tissue
6
mononuclear cell
6
spleen
5
MCF-7
5
erythroblast
5
fibroblast of cardiac tissue
5
heart left ventricle
5
inhibitory neuron
5
sigmoid colon
5
trophoblast cell
4
CD14-positive monocyte
4
body of pancreas
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
keratinocyte
4
mammary gland epithelial cell
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
psoas muscle
4
skeletal muscle satellite cell
4
thyroid gland
4
transverse colon
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
adipocyte
3
caudate nucleus
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
heart right ventricle
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
naive T cell
3
natural killer cell
3
neurosphere
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
regulatory T cell
3
retina
3
skeletal muscle fiber
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
type II pneumocyte
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
angular gyrus
2
aorta
2
aortic endothelial cell
2
ascending aorta
2
blood vessel smooth muscle cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
coronary artery
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endocardial cell
2
endodermal cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of lymphatic vessel
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fetal cardiomyocyte
2
fibroblast of breast
2
foreskin fibroblast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
hepatic stellate cell
2
islet of Langerhans
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neuron
2
neutrophil
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreas
2
pancreatic delta cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
prostate gland
2
retinal pigment epithelial cell
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
2
type I pneumocyte
2
urinary bladder
2
vagina
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, alpha-beta T cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
Organ
3
connective tissue
Life stage
1
adult
1
unknown
Date released
2
February, 2021
2
February, 2024
2
September, 2022
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
2
r
1
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
Showing 3 of 3 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE