Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
4
candidate regulatory elements
3
accessible chromatin
2
gene expression
2
target gene predictions
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
ATAC-seq
3
snATAC-seq
1
DNase-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
22
fibroblast
17
endothelial cell
16
macrophage
12
excitatory neuron
11
smooth muscle cell
10
pericyte cell
9
T cell
8
pancreatic ductal cell
7
astrocyte
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic beta cell
7
skeletal muscle fiber
6
B cell
6
enterocyte
6
heart
6
pancreatic delta cell
5
cardiac fibroblast
5
erythroblast
5
hepatocyte
5
inhibitory neuron
5
pancreas
5
skeletal muscle satellite cell
5
type II pneumocyte
4
adipocyte
4
basal cell
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
hepatic stellate cell
4
kidney
4
myofibroblast cell
4
pancreatic stellate cell
3
CD8-positive, alpha-beta T cell
3
Schwann cell
3
brain
3
brain pericyte
3
cardiac muscle cell
3
caudate nucleus
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
frontal cortex
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
goblet cell
3
heart left ventricle
3
keratinocyte
3
mammary gland epithelial cell
3
medulla oblongata
3
mesenchymal stem cell
3
mesothelial cell
3
midbrain
3
monocyte
3
natural killer cell
3
occipital lobe
3
osteoblast
3
pancreatic polypeptide-secreting cell
3
pons
3
putamen
3
regulatory T cell
3
renal cortical epithelial cell
3
renal pelvis
3
retina
3
retinal pigment epithelial cell
3
right atrium auricular region
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
superior temporal gyrus
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
MIN6
2
Muller cell
2
Rh-4 cell
2
acute myeloid leukemia cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
ciliated cell
2
club cell
2
coronary artery
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
heart right ventricle
2
islet of Langerhans
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mast cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
middle frontal gyrus
2
muscle of arm
2
muscle of leg
2
naive t cell
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
spinal cord
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
Organ
4
connective tissue
Date released
2
February, 2024
1
June, 2020
1
November, 2021
Software used
3
macs
1
deltasvm
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
1
ENCODE
RFA
2
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
IMR-90
annotation_type_category!
ATAC-seq
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP