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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
gene expression
1
caQTL
1
eQTL
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
7
kidney
5
hepatocyte
4
endothelial cell of hepatic sinusoid
3
endothelial cell
2
fibroblast
2
skeletal muscle fiber
2
smooth muscle cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
adipocyte
1
embryonic stem cell
1
glial cell
1
glomerular visceral epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mesenchymal stem cell
1
neural cell
1
neuron cell of Hypothalamus (neuron)
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle satellite cell
1
type I muscle cell
1
type II muscle cell
Organ
1
connective tissue
Life stage
1
adult
Date released
2
February, 2024
1
May, 2022
Software used
3
macs
Lab
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
3
AMP
RFA
7
ENCODE3
5
AMP
3
AMP2
biosample_term_name!
naive B cell
Showing 3 of 3 results
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Download
FileSet
DSR267QTT
released
Annotation file set
: Accessible chromatin annotation of Smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR309RZR
released
Annotation file set
: Cell type chromatin broad peaks and bw of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP