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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ATAC-seq
1
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
3
primary cell
1
cell line
Biosample term
17
neural progenitor cell
11
cardiomyocytes
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
6
embryonic stem cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
3
hepatocyte(AFP)
3
pancreatic ductal cell
2
B cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
adipose-derived stem cell
2
differentiating adipose-derived stem cell
2
excitatory neuron
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
lower motor neuron
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
bipolar neuron
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
dermis microvascular lymphatic vessel endothelial cell
1
endothelial cell
1
erythroid cell
1
foreskin keratinocyte
1
foreskin melanocyte
1
iPS DF 4.7 Cell Line
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
mammary gland epithelial cell
1
mesenchymal stem cell
1
mesendoderm
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
natural killer cell
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
olfactory neurosphere cell line
1
renal cell carcinoma
1
skin fibroblast
1
smooth muscle cell
1
stem cell
Organ
5
connective tissue
Life stage
1
adult
Date released
1
February, 2021
1
February, 2024
1
June, 2020
1
November, 2022
1
October, 2019
Software used
4
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP