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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
6
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
6
bed bed3+
2
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
cell line
Biosample term
23
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
16
monocyte
13
excitatory neuron
11
macrophage
10
kidney
10
neural progenitor cell
9
pericyte cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
pancreatic acinar cell
7
pancreatic alpha cell
6
T cell
6
adipocyte
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
5
B cell
5
SGBS preadipocytes
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
islet of Langerhans
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
liver
4
pancreatic stellate cell
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
enterocyte
3
gabaergic neuron
3
heart left ventricle
3
hepatic stellate cell
3
mesenchymal stem cell
3
regulatory T cell
3
right atrium auricular region
3
skin fibroblast
3
stomach
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
2
Ammon's horn
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
cardiac muscle cell
2
caudate nucleus
2
differentiating adipose-derived stem cell
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
frontal cortex
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
muscle of leg
2
natural killer cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
smooth muscle cell of the esophagus
2
spleen
2
subcutaneous adipose tissue
2
superior temporal gyrus
2
type I pneumocyte
1
hindlimb muscle
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Ishikawa
1
Peyer's patch
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
T-helper 1 cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
alveolar macrophage
1
aortic adventitial fibroblast
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
basal cell of epidermis
1
bipolar neuron
1
brain microvascular endothelial cell
1
brain pericyte
1
breast epithelium
1
bronchial epithelial cell
1
cardiac endothelial cell
1
cardiac precursors
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
chorion membrane
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated cell
1
ciliated epithelial cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
cortex of kidney
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dermis microvascular lymphatic vessel endothelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
embryonic facial prominence
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
esophagus muscularis mucosa
1
esophagus squamous epithelium
1
extravillous trophoblast
1
eye
1
fetal heart
1
fetal thymocyte
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
forelimb muscle
1
foreskin fibroblast
1
foreskin keratinocyte
1
foreskin melanocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
gastrocnemius medialis
1
glomerular epithelium
1
goblet cell
1
granular cell of epidermis
1
heart right ventricle
1
hematopoietic multipotent progenitor cell
1
hepatoblast
1
hippocampal neuron
1
iPS DF 4.7 Cell Line
1
inferior parietal cortex
1
intestinal tuft cell
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney interstitial cell
Organ
6
connective tissue
Date released
2
February, 2024
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
6
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
5
AMP
1
ENCODE
RFA
4
AMP
1
AMP2
1
ENCODE3
biosample_type!
cell line
Showing 6 of 6 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP