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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
8
cis-regulatory elements
Annotation type Category
5
DNase-seq
4
ChIP-seq
2
ATAC-seq
1
snATAC-seq
Available data
8
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
43
stomach
42
heart
39
kidney
34
muscle of arm
33
lung
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
23
right lung
22
A549
22
retina
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
19
B cell
18
left kidney
18
monocyte
17
liver
17
spleen
16
spinal cord
15
neural progenitor cell
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
12
foreskin keratinocyte
11
CD8-positive, alpha-beta T cell
11
pigmented layer of retina
11
sigmoid colon
10
MCF-7
10
hepatocyte
10
natural killer cell
10
pancreas
10
regulatory T cell
10
trophoblast cell
9
T-helper 1 cell
9
gastrocnemius medialis
9
ovary
9
thyroid gland
9
tibial nerve
9
transverse colon
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
EndoC_BH1
8
K562
8
Peyer's patch
8
adipocyte
8
adipose tissue
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
psoas muscle
8
testis
8
upper lobe of left lung
7
H9
7
T cell
7
T-helper 17 cell
7
T-helper 2 cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
mesenchymal stem cell
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
osteoblast
7
right renal pelvis
6
breast epithelium
6
coronary artery
6
dermis blood vessel endothelial cell
6
endothelial cell
6
esophagus muscularis mucosa
6
fibroblast of lung
6
islet of Langerhans
6
layer of hippocampus
6
lower leg skin
6
pancreatic beta cell
6
pancreatic ductal cell
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial artery
5
HeLa-S3
5
SK-N-DZ
5
WI38
5
ascending aorta
5
bronchial epithelial cell
5
embryonic stem cell
5
epithelial cell of prostate
5
eye
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
gastroesophageal sphincter
5
glomerular visceral epithelial cell
5
kidney tubule cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic alpha cell
5
parathyroid adenoma
5
prostate gland
5
smooth muscle cell
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
HepG2
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
endothelial cell of hepatic sinusoid
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
kidney glomerular epithelial cell
4
limb
4
macrophage
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neural cell
4
neutrophil
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
retinal pigment epithelial cell
4
skeletal muscle satellite cell
4
skin fibroblast
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
3
H4
3
HAP-1
3
HL-60
3
HT-29
3
HUES6
3
IMR-90
3
KBM-7
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
M059J
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
Organ
8
connective tissue
Life stage
2
adult
2
unknown
Date released
2
February, 2021
2
February, 2024
2
September, 2022
1
June, 2020
November, 2022
1
October, 2019
Software used
4
macs
2
encode-ccres
2
r
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
ENCODE3
month_released!
November, 2022
award.rfa!
ENCODE3
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP