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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
3
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
8
bed bed3+
2
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
3
primary cell
Biosample term
25
retina
24
fibroblast
20
endothelial cell
20
pigmented layer of retina
19
monocyte
17
macrophage
14
neural progenitor cell
13
excitatory neuron
12
endothelial cell of hepatic sinusoid
12
kidney
11
hepatocyte
11
pancreatic ductal cell
11
retinal pigment epithelial cell
11
smooth muscle cell
10
EndoC_BH1
10
islet of Langerhans
10
pericyte cell
9
T cell
9
breast cancer cell
9
embryonic stem cell
9
pancreatic beta cell
8
B cell
8
adipocyte
8
astrocyte
8
heart
8
osteoblast
8
pancreatic acinar cell
8
pancreatic alpha cell
7
cardiac muscle cell
7
erythroblast
7
fibroblast cell line
7
keratinocyte
7
melanoma
7
pancreas
7
skeletal muscle fiber
6
SGBS preadipocytes
6
chondrocyte
6
enterocyte
6
glutamatergic neuron
6
pancreatic delta cell
6
regulatory T cell
5
cardiac fibroblast
5
CD8-positive, alpha-beta T cell
5
HepG2
5
choroid plexus epithelial cell
5
coronary artery
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
heart left ventricle
5
hepatic stellate cell
5
inhibitory neuron
5
liver
5
mammary epithelial cell
5
mammary gland epithelial cell
5
myofibroblast cell
5
prostate cancer cell line
5
right atrium auricular region
5
skeletal muscle myoblast
5
skeletal muscle satellite cell
5
tibial artery
5
tibial nerve
5
type II pneumocyte
4
MCF-7
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Rh-4 cell
4
acute myeloid leukemia
4
adipose tissue
4
basal cell
4
brain
4
cortical cell of adrenal gland
4
dermal fibroblast
4
glioblastoma multiforme cancer stem cell
4
glomerular visceral epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
midbrain
4
natural killer cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic stellate cell
4
skin fibroblast
4
spinal cord
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
ECC-1
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
IMR-90
3
Jurkat
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
RS4-11 cell
3
SAEC
3
SK-N-MC
SK-N-SH_RA
3
Schwann cell
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
adipose-derived stem cell
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
brain pericyte
3
bronchial epithelial cell
3
caudate nucleus
3
colon epithelial cell
3
diffuse intrinsic pontine glioma
3
endothelial cell of lymphatic vessel
3
epithelial cell of proximal tubule
3
erythroid cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
frontal cortex
3
gabaergic neuron
3
glial cell
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
kidney glomerular epithelial cell
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
mast cell
3
medulla oblongata
3
mesothelial cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
pons
3
primordial germ cell
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
renal epithelial cell
3
renal pelvis
3
spleen
3
stomach
3
subcutaneous adipose tissue
3
superior temporal gyrus
3
synovial sarcoma cell
3
tracheal epithelial cell
3
triple-negative breast cancer
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
786-O cell
2
A-673 cell
2
Ammon's horn
2
B-lymphocyte
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
D341 Med cell
2
DND-41 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM08714
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
Organ
8
connective tissue
Date released
3
February, 2024
1
February, 2021
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
7
macs
1
deltasvm
Lab
5
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
7
AMP
1
ENCODE
RFA
6
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
SK-N-SH_RA
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP