Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
24
retina
20
pigmented layer of retina
18
endothelial cell
17
fibroblast
17
monocyte
14
neural progenitor cell
13
excitatory neuron
13
macrophage
12
endothelial cell of hepatic sinusoid
11
kidney
10
pancreatic ductal cell
10
retinal pigment epithelial cell
9
EndoC_BH1
9
breast cancer cell
9
embryonic stem cell
9
hepatocyte
9
pericyte cell
9
smooth muscle cell
8
astrocyte
8
pancreatic beta cell
7
adipocyte
7
fibroblast cell line
7
melanoma
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
6
SGBS preadipocytes
6
T cell
6
chondrocyte
6
glutamatergic neuron
6
heart
6
islet of Langerhans
6
keratinocyte
6
pancreas
5
B cell
5
erythroblast
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
liver
5
pancreatic delta cell
5
prostate cancer cell line
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
Rh-4 cell
4
acute myeloid leukemia
4
cardiac muscle cell
4
dermal fibroblast
4
glioblastoma multiforme cancer stem cell
4
hepatic stellate cell
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic stellate cell
4
regulatory T cell
4
skin fibroblast
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
HepG2
3
Jurkat
3
MCF-7
3
RS4-11 cell
3
T-cell acute lymphoblastic leukemia
3
Th1 cell
3
Tumor-derived cell line
3
adipose tissue
3
adipose-derived stem cell
3
aortic endothelial cell
3
brain
3
bronchial epithelial cell
3
choroid plexus epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
diffuse intrinsic pontine glioma
3
enterocyte
3
erythroid cell
3
foreskin fibroblast
3
gabaergic neuron
3
glial cell
3
glomerular visceral epithelial cell
3
heart left ventricle
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
primordial germ cell
3
prostate gland
3
right atrium auricular region
3
spinal cord
3
spleen
3
stomach
3
synovial sarcoma cell
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
triple-negative breast cancer
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
2
786-O cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
Caco-2 cell
2
D341 Med cell
2
Daoy
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12878
2
GM13976
2
GM13977
2
GM19240
2
GM20000
2
GM23248
2
GP5d
2
H1-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
2
HuH-7
2
IMR-90
2
Ishikawa
2
K562
2
KARPAS-422 cell
2
KBM-7
2
Kasumi-1
2
L-1236 cell
2
L-428 cell
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Muller cell
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PANC-1 cell
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Rhabdomyosarcoma
2
SAEC
2
SJSA1
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH_RA
2
SUDHL5
2
SUM-185PE cell
2
SW480
2
Saos-2 cell
2
T-47D cell
2
T-lymphocyte
2
Th17 cell
Organ
7
connective tissue
Date released
2
February, 2024
1
February, 2021
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
7
macs
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
1
ENCODE
RFA
5
AMP
1
AMP2
1
ENCODE3
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP