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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
primary cell
Biosample term
41
stomach
40
heart
36
kidney
34
lung
33
muscle of arm
30
brain
29
adrenal gland
29
small intestine
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
20
hematopoietic multipotent progenitor cell
20
renal cortex interstitium
20
right kidney
20
thymus
19
renal pelvis
18
left kidney
16
spleen
14
liver
14
spinal cord
12
heart left ventricle
12
neural progenitor cell
11
cardiomyocytes
11
islet of Langerhans
10
adipose tissue
10
body of pancreas
10
sigmoid colon
9
H1-hESC
9
MCF-7
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
ovary
9
progenitor cell of endocrine pancreas
8
EndoC_BH1
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
testis
8
thyroid gland
8
tibial nerve
8
transverse colon
7
H9
7
K562
7
Peyer's patch
7
endocrine pancreas
7
heart right ventricle
7
omental fat pad
7
psoas muscle
7
retina
7
skeletal muscle tissue
7
subcutaneous adipose tissue
7
upper lobe of left lung
6
caudate nucleus
6
esophagus squamous epithelium
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
right renal pelvis
6
substantia nigra
6
temporal lobe
5
HeLa-S3
5
WI38
5
adipocyte
5
aorta
5
ascending aorta
5
breast epithelium
5
cerebellum
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
pancreas
5
parathyroid adenoma
5
right atrium auricular region
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
vagina
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
angular gyrus
4
bone tissue
4
cardiac muscle cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cingulate gyrus
4
colonic mucosa
4
coronary artery
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
eye
4
frontal cortex
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
prostate gland
4
stomach smooth muscle
4
thoracic aorta
4
tibial artery
4
tongue
4
trophoblast
4
uterus
3
Ammon's horn
3
HEK293
3
LNCaP clone FGC
3
MCF 10A
3
T47D
3
chorion membrane
3
endometrium adenocarcinoma
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
left cardiac atrium
3
limb
3
mesenchymal stem cell
3
neural cell
3
pancreatic ductal cell
3
putamen
3
right cardiac atrium
3
right lobe of liver
3
smooth muscle cell
3
suprapubic skin
3
urinary bladder
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Brodmann (1909) area 46
2
C4-2B
2
CMK
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM12878
2
GM23248
2
GM23338
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
HUES48
2
HUES6
2
HUES64
2
HepG2
2
IMR-90
2
KBM-7
2
KMS-11
2
KOPT-K1
2
L1-S8
2
LHCN-M2
2
LNCAP
2
Loucy
2
M059J
2
MG63
2
MM.1S
2
NAMALWA
2
NAMALWA cell
2
NB4
2
NCI-H929
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PC-3
2
PC-9
2
Panc1
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
RWPE2
2
SJCRH30
2
SJSA1
2
SK-MEL-5
2
SK-N-MC
2
SU-DHL-6
Organ
5
connective tissue
Life stage
3
adult
2
unknown
Date released
3
February, 2021
2
September, 2022
Software used
3
r
2
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
CD4-positive, alpha-beta memory T cell
biosample_type!
primary cell
Showing 5 of 5 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP