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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
4
chromatin state
4
target gene predictions
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
2
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
22
kidney
22
stomach
21
heart
18
lung
17
epithelial cell of proximal tubule
17
muscle of arm
15
adrenal gland
15
glomerular endothelial cell
15
large intestine
15
monocyte
15
muscle of back
14
brain
14
common myeloid progenitor, CD34-positive
14
hepatocyte
14
muscle of leg
14
small intestine
13
left lung
12
placenta
11
cardiomyocytes
11
islet of Langerhans
11
renal cortex interstitium
11
right lung
10
CD8-positive, alpha-beta T cell
10
T-helper 1 cell
10
endothelial cell
10
hematopoietic multipotent progenitor cell
10
renal pelvis
10
right kidney
10
spleen
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
left kidney
9
progenitor cell of endocrine pancreas
9
regulatory T cell
9
thymus
8
B cell
8
CD4-positive, alpha-beta T cell
8
EndoC_BH1
8
H1-hESC
8
neural progenitor cell
7
foreskin keratinocyte
7
heart left ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
liver
7
spinal cord
7
subcutaneous adipose tissue
6
H9
6
body of pancreas
6
glomerular visceral epithelial cell
6
kidney interstitial cell
6
pancreatic ductal cell
5
CD4-positive, alpha-beta memory T cell
5
T-helper 2 cell
5
cardiac muscle cell
5
foreskin fibroblast
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
natural killer cell
5
omental fat pad
5
ovary
5
sigmoid colon
5
subcutaneous abdominal adipose tissue
5
testis
5
tibial nerve
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
WI38
4
adipocyte
4
adipose tissue
4
bone tissue
4
cardiac fibroblast
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
chorionic villus
4
dermis blood vessel endothelial cell
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
esophagus squamous epithelium
4
gamma-delta T cell
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
heart right ventricle
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
muscle of trunk
4
nephron progenitor
4
neurosphere
4
peripheral blood mononuclear cell
4
retina
4
right renal pelvis
4
skeletal muscle tissue
4
substantia nigra
4
temporal lobe
4
thyroid gland
4
transverse colon
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
MCF 10A
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
aorta
3
ascending aorta
3
breast epithelium
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
cerebellum
3
effector memory CD8-positive, alpha-beta T cell
3
endocrine pancreas
3
esophagus muscularis mucosa
3
fibroblast of lung
3
foreskin melanocyte
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
layer of hippocampus
3
mammary epithelial cell
3
memory B cell
3
mesenchymal stem cell
3
mesodermal cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neural cell
3
osteoblast
3
pancreas
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
parathyroid adenoma
3
psoas muscle
3
right atrium auricular region
Organ
4
connective tissue
Life stage
2
adult
1
unknown
Date released
3
February, 2021
September, 2022
1
February, 2024
Software used
2
encode-ccres
2
r
1
deeptools
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
month_released!
September, 2022
Showing 4 of 4 results
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Download
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP