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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
2
candidate regulatory elements
1
gene expression
1
variant allelic effects
Annotation Category
8
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
DNase-seq
2
ChIP-seq
2
snATAC-seq
Available data
8
bed bed3+
2
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
primary cell
Biosample term
26
retina
24
heart
24
kidney
22
stomach
20
pigmented layer of retina
19
A549
18
brain
18
monocyte
17
B cell
17
muscle of arm
16
endothelial cell
16
fibroblast
16
lung
16
small intestine
15
adrenal gland
15
muscle of leg
15
placenta
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
macrophage
13
muscle of back
12
right lung
12
thymus
11
T cell
11
hematopoietic multipotent progenitor cell
11
liver
11
pericyte cell
11
renal pelvis
11
right kidney
10
hepatocyte
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
left kidney
9
spinal cord
8
EndoC_BH1
8
adipocyte
8
adipose tissue
8
heart left ventricle
8
pancreatic beta cell
8
pancreatic ductal cell
8
regulatory T cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
K562
7
fibroblast of cardiac tissue
7
islet of Langerhans
7
natural killer cell
7
pancreas
7
pancreatic acinar cell
7
pancreatic alpha cell
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
mononuclear cell
6
sigmoid colon
6
skeletal muscle satellite cell
6
tibial nerve
6
trophoblast cell
5
CD8-positive, alpha-beta T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
caudate nucleus
5
chondrocyte
5
coronary artery
5
erythroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
inhibitory neuron
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
osteoblast
5
ovary
5
pancreatic delta cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle fiber
5
skin fibroblast
5
thyroid gland
5
tibial artery
5
transverse colon
4
CD14-positive monocyte
Peyer's patch
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
frontal cortex
4
glomerular visceral epithelial cell
4
heart right ventricle
4
hepatic stellate cell
4
keratinocyte
4
kidney tubule cell
4
memory B cell
4
muscle of trunk
4
omental fat pad
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
testis
4
type II pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
HeLa-S3
3
NAMALWA cell
3
SK-N-DZ
3
ascending aorta
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
midbrain
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
thoracic aorta
3
tongue
3
trophoblast
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H4
2
H7-hESC
2
HAP-1
Organ
8
connective tissue
Life stage
1
adult
1
unknown
Date released
February, 2021
2
February, 2024
2
September, 2022
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
6
macs
2
r
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
7
AMP
1
ENCODE
RFA
6
AMP
1
AMP2
1
ENCODE3
month_released!
February, 2021
biosample_term_name!
Peyer's patch
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP