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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
5
target gene predictions
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
2
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
41
stomach
40
heart
36
kidney
34
lung
33
muscle of arm
30
brain
29
adrenal gland
29
small intestine
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
20
common myeloid progenitor, CD34-positive
20
renal cortex interstitium
20
right kidney
20
thymus
19
renal pelvis
18
hematopoietic multipotent progenitor cell
18
left kidney
16
epithelial cell of proximal tubule
16
spleen
15
hepatocyte
15
monocyte
14
glomerular endothelial cell
14
liver
14
spinal cord
13
B cell
12
heart left ventricle
12
neural progenitor cell
11
T-helper 1 cell
11
cardiomyocytes
11
foreskin keratinocyte
11
islet of Langerhans
10
adipose tissue
10
body of pancreas
10
endothelial cell
10
regulatory T cell
10
sigmoid colon
9
CD8-positive, alpha-beta T cell
9
MCF-7
9
induced pluripotent stem cell
9
ovary
9
trophoblast cell
8
EndoC_BH1
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
natural killer cell
8
testis
8
thyroid gland
8
tibial nerve
8
transverse colon
7
H9
7
K562
7
Peyer's patch
7
T-helper 17 cell
7
foreskin fibroblast
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
neurosphere
7
omental fat pad
7
psoas muscle
7
retina
7
subcutaneous adipose tissue
7
upper lobe of left lung
6
CD14-positive monocyte
6
T-helper 2 cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
endocrine pancreas
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
kidney interstitial cell
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
right renal pelvis
6
substantia nigra
6
temporal lobe
5
CD4-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
HeLa-S3
5
aorta
5
ascending aorta
5
breast epithelium
5
cerebellum
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
mesenchymal stem cell
5
mononuclear cell
5
pancreas
5
parathyroid adenoma
5
right atrium auricular region
5
right renal cortex interstitium
5
skeletal muscle tissue
5
subcutaneous abdominal adipose tissue
5
vagina
4
SK-N-DZ
4
SK-N-SH
4
adipocyte
4
angular gyrus
4
bone tissue
4
cardiac muscle cell
4
cingulate gyrus
4
colonic mucosa
4
coronary artery
4
duodenal mucosa
4
endodermal cell
4
endothelial cell of hepatic sinusoid
4
esophagus
4
eye
4
fibroblast of breast
4
foreskin melanocyte
4
frontal cortex
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney tubule cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
neural cell
4
peripheral blood mononuclear cell
4
prostate gland
4
skeletal muscle satellite cell
4
smooth muscle cell
4
stomach smooth muscle
4
thoracic aorta
4
tibial artery
4
tongue
4
trophoblast
4
uterus
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD4-positive, alpha-beta memory T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HEK293
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
LNCaP clone FGC
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
MCF 10A
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
Organ
4
connective tissue
Life stage
3
adult
unknown
Date released
2
February, 2021
1
February, 2024
1
September, 2022
Software used
3
r
1
deeptools
1
encode-ccres
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
relevant_life_stage!
unknown
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP