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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
4
target gene predictions
2
candidate regulatory elements
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
8
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
DNase-seq
2
ChIP-seq
2
snATAC-seq
Available data
8
bed bed3+
2
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
primary cell
Biosample term
26
retina
25
kidney
24
stomach
23
heart
20
pigmented layer of retina
18
monocyte
18
muscle of arm
17
lung
16
endothelial cell
16
fibroblast
16
muscle of leg
15
adrenal gland
15
brain
15
large intestine
15
muscle of back
15
small intestine
14
B cell
14
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
macrophage
13
placenta
12
CD8-positive, alpha-beta T cell
12
renal cortex interstitium
12
renal pelvis
12
right lung
11
neural progenitor cell
11
right kidney
11
spleen
10
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
retinal pigment epithelial cell
10
smooth muscle cell
10
thymus
9
CD4-positive, alpha-beta T cell
9
astrocyte
9
heart left ventricle
9
hepatocyte
9
left kidney
9
spinal cord
8
EndoC_BH1
8
adipocyte
8
foreskin keratinocyte
8
pancreas
8
pancreatic beta cell
8
pancreatic ductal cell
7
T cell
7
cardiac muscle cell
7
islet of Langerhans
7
natural killer cell
7
pancreatic acinar cell
7
pancreatic alpha cell
7
regulatory T cell
6
H9
6
SGBS preadipocytes
6
T-helper 1 cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
foreskin fibroblast
6
glutamatergic neuron
6
osteoblast
6
sigmoid colon
6
skeletal muscle satellite cell
6
tibial nerve
5
CD4-positive, alpha-beta memory T cell
5
MCF-7
5
Peyer's patch
5
chondrocyte
5
erythroblast
5
esophagus squamous epithelium
5
gastrocnemius medialis
5
inhibitory neuron
5
left renal cortex interstitium
5
left renal pelvis
5
mesenchymal stem cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
omental fat pad
5
ovary
5
pancreatic delta cell
5
right renal pelvis
5
skeletal muscle fiber
5
subcutaneous abdominal adipose tissue
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
5
upper lobe of left lung
4
A549
4
CD14-positive monocyte
4
T-cell
4
T-helper 17 cell
4
T-helper 2 cell
4
WI38
4
body of pancreas
4
breast epithelium
4
caudate nucleus
4
chorionic villus
4
coronary artery
4
dermis blood vessel endothelial cell
4
esophagus muscularis mucosa
4
fibroblast of cardiac tissue
4
foreskin melanocyte
4
gastroesophageal sphincter
4
glomerular visceral epithelial cell
4
heart right ventricle
4
lower leg skin
4
mammary epithelial cell
4
memory B cell
4
muscle of trunk
4
neurosphere
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
psoas muscle
4
right atrium auricular region
4
right renal cortex interstitium
4
skeletal muscle myoblast
4
subcutaneous adipose tissue
4
tibial artery
4
type II pneumocyte
3
cardiac fibroblast
3
Ammon's horn
3
HEK293
3
HepG2
3
LNCAP
3
MCF 10A
3
SK-N-DZ
3
adipose tissue
3
ascending aorta
3
brain pericyte
3
bronchial epithelial cell
3
cardiac fibroblast
3
choroid plexus epithelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
dermis microvascular lymphatic vessel endothelial cell
3
endocrine pancreas
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
eye
3
fibroblast of lung
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
layer of hippocampus
3
mesodermal cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neural cell
3
neuron
3
neuronal stem cell
3
parathyroid adenoma
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle tissue
3
skin fibroblast
3
substantia nigra
3
suprapubic skin
3
temporal lobe
3
thoracic aorta
3
tongue
3
trophoblast
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
uterus
2
22Rv1
2
A172
2
ACHN
2
AG10803
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caki2
2
Daoy
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12878
2
GM13976
2
GM13977
2
GM20000
2
GM23248
2
H4
2
HAP-1
2
HL-60
2
HT-29
2
HUES6
2
HeLa-S3
Organ
8
connective tissue
Life stage
1
adult
1
unknown
Date released
2
February, 2021
2
February, 2024
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
6
macs
2
encode-ccres
r
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
7
AMP
1
ENCODE
RFA
6
AMP
1
AMP2
1
ENCODE3
software_used.software.name!
r
Showing 8 of 8 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP