Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
Annotation type Category
6
ChIP-seq
1
RNA-seq
Available data
4
bed bed3+
2
bed bed9
1
tsv
File set status
7
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
24
heart
23
kidney
20
stomach
19
brain
18
A549
17
epithelial cell of proximal tubule
17
lung
16
muscle of arm
15
adrenal gland
15
glomerular endothelial cell
15
monocyte
15
muscle of leg
15
small intestine
14
islet of Langerhans
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
neural progenitor cell
11
right lung
11
thymus
10
B cell
10
H1-hESC
10
hepatocyte
10
liver
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
endothelial cell
9
heart left ventricle
9
induced pluripotent stem cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
EndoC_BH1
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adipocyte
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
spinal cord
7
spleen
6
T-helper 17 cell
6
body of pancreas
6
embryonic stem cell
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
subcutaneous adipose tissue
6
temporal lobe
6
tibial nerve
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
T-helper 1 cell
5
T-helper 2 cell
5
alternatively activated macrophage
5
aorta
5
caudate nucleus
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
natural killer cell
5
ovary
5
regulatory T cell
5
sigmoid colon
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
T cell
4
angular gyrus
4
ascending aorta
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
gastrocnemius medialis
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
muscle of trunk
4
nephron progenitor
4
omental fat pad
4
psoas muscle
4
retina
4
right atrium auricular region
4
right cardiac atrium
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial artery
4
transverse colon
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HeLa-S3
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
osteoblast
3
pancreas
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
skeletal muscle satellite cell
3
stomach smooth muscle
3
thoracic aorta
3
upper lobe of left lung
Organ
7
connective tissue
Life stage
2
adult
1
unknown
Date released
4
August, 2017
2
September, 2022
1
February, 2021
February, 2024
Software used
6
chromhmm
1
r
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
month_released!
February, 2024
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP