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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
6
ChIP-seq
1
snATAC-seq
Available data
5
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
primary cell
Biosample term
7
adipocyte
7
adipose tissue
6
fibroblast
4
fibroblast of lung
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
mesenchymal stem cell
2
cardiac fibroblast
2
foreskin fibroblast
2
hepatic stellate cell
2
omental fat pad
2
skin fibroblast
2
subcutaneous adipose tissue
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
GM23248
1
HT1080
1
Preadipose SGBS cell line (adipocyte)
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
brain pericyte
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
osteoblast
1
pericyte cell
1
stromal cell of bone marrow
1
subcutaneous abdominal adipose tissue
Organ
7
connective tissue
Life stage
1
adult
1
unknown
Date released
4
August, 2017
2
September, 2022
1
February, 2024
Software used
6
chromhmm
1
deltasvm
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP