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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
5
accessible chromatin
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Gene expression levels
Annotation type Category
3
ATAC-seq
1
DNase-seq
1
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
1
tsv
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
33
monocyte
24
retina
20
hepatocyte
20
pigmented layer of retina
17
epithelial cell of proximal tubule
17
islet of Langerhans
17
kidney
17
neural progenitor cell
16
EndoC_BH1
16
glomerular endothelial cell
15
endothelial cell
12
pancreatic ductal cell
12
regulatory T cell
11
cardiomyocytes
10
T-helper 1 cell
9
H1-hESC
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
pancreatic beta cell
9
progenitor cell of endocrine pancreas
8
endothelial cell of hepatic sinusoid
8
glomerular visceral epithelial cell
8
heart
8
pancreatic alpha cell
8
retinal pigment epithelial cell
7
B cell
7
CD8-positive, alpha-beta T cell
7
adipocyte
7
embryonic stem cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
osteoblast
7
pancreatic acinar cell
7
pancreatic delta cell
7
subcutaneous adipose tissue
6
SGBS preadipocytes
6
gamma-delta T cell
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
natural killer cell
6
pancreatic stellate cell
5
T-helper 2 cell
5
adipose tissue
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
liver
5
macrophage
5
mesangial cell
5
pancreas
5
right atrium auricular region
5
tibial nerve
4
T follicular helper cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
frontal cortex
4
glutamatergic neuron
4
heart left ventricle
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesenchymal stem cell
4
naive B cell
4
nephron progenitor
4
omental fat pad
4
pancreatic polypeptide-secreting cell
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
smooth muscle cell
4
stomach
4
tibial artery
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
brain
3
caudate nucleus
3
cerebellum
3
hepatic stellate cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
naive regulatory T cell
3
occipital lobe
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
smooth muscle cell of the coronary artery
3
spleen
3
type I muscle cell
3
type II muscle cell
2
CD4-positive helper T cell
2
HepG2
2
Kupffer cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
Schwann cell
2
T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
ascending aorta
2
astrocyte
2
body of pancreas
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
choroid plexus epithelial cell
2
differentiating adipose-derived stem cell
2
endothelial cell of umbilical vein
2
erythroid cell
2
excitatory neuron
2
extracellular matrix secreting cell
2
fibroblast of cardiac tissue
2
glial cell
2
globus pallidus
2
heart right ventricle
2
hematopoietic multipotent progenitor cell
2
hippocampal neuron
2
kidney epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
left cardiac atrium
2
lower motor neuron
2
medulla oblongata
2
midbrain
Organ
7
connective tissue
Life stage
1
adult
Date released
3
February, 2024
1
February, 2021
1
June, 2020
1
November, 2022
1
October, 2019
Software used
5
macs
2
r
1
deeptools
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
2
Stephen Parker, UMich
Bing Ren, UCSD
Project
7
AMP
RFA
5
AMP
2
AMP2
lab.title!
Bing Ren, UCSD
Showing 7 of 7 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP