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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
Annotation type Category
6
ChIP-seq
1
RNA-seq
Available data
4
bed bed3+
2
bed bed9
1
tsv
File set status
7
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
24
heart
20
stomach
19
brain
18
A549
17
lung
16
epithelial cell of proximal tubule
16
kidney
16
muscle of arm
15
adrenal gland
15
monocyte
15
muscle of leg
15
small intestine
14
glomerular endothelial cell
14
islet of Langerhans
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
neural progenitor cell
11
right lung
11
thymus
10
B cell
10
H1-hESC
10
T-helper 1 cell
10
hepatocyte
10
liver
10
regulatory T cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
T-helper 17 cell
9
adipose tissue
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
induced pluripotent stem cell
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
8
EndoC_BH1
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adipocyte
7
kidney loop of Henle thin ascending limb epithelial cell
7
left cardiac atrium
7
mature neutrophil
7
spinal cord
7
spleen
6
T-helper 2 cell
6
body of pancreas
6
embryonic stem cell
6
endothelial cell
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
pancreatic ductal cell
6
subcutaneous adipose tissue
6
temporal lobe
6
tibial nerve
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
aorta
5
caudate nucleus
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
ovary
5
sigmoid colon
5
trophoblast cell
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
ascending aorta
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
natural killer cell
4
nephron progenitor
4
omental fat pad
4
psoas muscle
4
retina
4
right atrium auricular region
4
right cardiac atrium
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial artery
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
S-shaped body
3
adult endothelial progenitor cell
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
mammary gland epithelial cell
3
memory B cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
osteoblast
3
pancreas
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
skeletal muscle satellite cell
3
stomach smooth muscle
3
thoracic aorta
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
HepG2
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T follicular helper cell
2
T47D
2
astrocyte
2
breast epithelium
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
germinal matrix
2
hepatic stellate cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cel
2
neutrophil
Organ
7
connective tissue
Life stage
2
adult
1
unknown
Date released
4
August, 2017
2
September, 2022
1
February, 2021
Software used
6
chromhmm
1
r
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
1
AMP2
Showing 7 of 7 results
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP