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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
5
accessible chromatin
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
Target gene links
2
Gene expression levels
Annotation type Category
6
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
2
ChIP-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
23
K562
23
heart
22
stomach
21
kidney
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
lung
17
brain
17
epithelial cell of proximal tubule
17
monocyte
17
small intestine
16
hepatocyte
16
muscle of arm
15
glomerular endothelial cell
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
B cell
12
islet of Langerhans
12
neural progenitor cell
11
adipose tissue
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
T-helper 1 cell
10
T-helper 17 cell
10
endothelial cell
10
induced pluripotent stem cell
10
pituitary stalk
10
regulatory T cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
GM12878
8
H9
8
adipocyte
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
ovary
7
pancreatic ductal cell
7
sigmoid colon
7
trophoblast cell
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
T-helper 2 cell
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
5
aorta
5
cardiac precursors (cardiac muscle cell)
5
gastrocnemius medialis
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
mesenchymal stem cell
5
muscle of trunk
5
pancreas
5
subcutaneous adipose tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
adult endothelial progenitor cell
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
macrophage
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
omental fat pad
4
osteoblast
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
retina
4
right atrium auricular region
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
testis
3
Ammon's horn
3
HCT116
3
HepG2
3
Peyer's patch
3
S-shaped body
3
SK-N-SH
3
ascending aorta
3
astrocyte
3
breast epithelium
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
layer of hippocampus
3
mammary gland epithelial cell
3
memory B cell
3
mesendoderm
3
naive T cell
3
neurosphere
3
neutrophil
3
right cardiac atrium
3
skeletal muscle satellite cell
3
smooth muscle cell
3
smooth muscle cell of the coronary artery
3
substantia nigra
3
temporal lobe
3
tibial artery
3
trophoblast
3
upper lobe of left lung
3
uterus
3
vagina
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
Kupffer cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T follicular helper cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
alternatively activated macrophage
2
angular gyrus
2
bipolar neuron
2
bronchial epithelial cell
Organ
8
connective tissue
Life stage
2
adult
1
unknown
Date released
4
May, 2021
2
September, 2022
1
February, 2021
1
February, 2024
Software used
4
abc
4
r
1
deeptools
1
samtools
1
umitools
Lab
4
Jesse Engreitz, Stanford University
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
Showing 8 of 8 results
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Download
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP