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Citing CMDGA
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Annotation type
10
accessible chromatin
7
target gene predictions
6
chromatin state
4
candidate regulatory elements
4
gene expression
3
differential activity
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
4
Gene expression levels
Annotation type Category
2
scRNA-seq
1
RNA-seq
1
snRNA-seq
Available data
2
tsv
File set status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
5
mesangial cell
5
subcutaneous adipose tissue
4
bone tissue
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Fibroblast
3
Mesangial Cell
3
adipose tissue
3
adult endothelial progenitor cell
2
adipocyte
2
omental fat pad
2
osteoblast
2
pancreatic stellate cell
2
visceral abdominal adipose tissue
1
activated pancreatic stellate cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
hepatic stellate cell
1
kidney interstitial fibroblast
1
mesenchymal stem cell
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
quiescent pancreatic stellate cell
Organ
4
connective tissue
2
pancreas
Life stage
1
adult
Date released
1
August, 2018
1
February, 2021
1
February, 2024
1
March, 2023
Software used
4
r
1
deeptools
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
biosample_term_name!
cerebellum
Showing 4 of 4 results
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FileSet
DSR457DGF
released
Annotation file set
: Gene expression annotation of pancreatic stellate from single-cell transcriptome analysis
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR656WJC
released
Annotation file set
: pancreatic stellate cell TPM gene expreassion matrix and statistic summary from scRNA-seq publications for non-diabetic adults
Lab:
AMP-T2D consortium
Project:
AMP