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Citing CMDGA
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Annotation type
4
chromatin state
1
accessible chromatin
1
gene expression
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
ChIP-seq
1
snRNA-seq
Available data
4
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
primary cell
Biosample term
5
adipocyte
2
ESC derived cell line
2
skeletal muscle fiber
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
glial cell
1
islet of Langerhans
1
keratinocyte
1
layer of hippocampus
1
leukocyte
1
liver
1
mammary epithelial cell
1
mesenchymal stem cell
1
mid-frontal lobe
1
mucosa of rectum
1
neural cell
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell
1
stomach smooth muscle
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
1
type I muscle cell
1
type II muscle cell
Organ
5
connective tissue
Date released
4
August, 2017
1
February, 2024
Software used
4
chromhmm
1
deeptools
1
r
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
5
Stephen Parker, UMich
1
Katalin Susztak, Upenn
Project
5
AMP
RFA
4
AMP
1
AMP2
Showing 5 of 5 results
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Download
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP