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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
candidate regulatory elements
9
chromatin state
9
target gene predictions
6
accessible chromatin
3
gene expression
2
eQTL
2
histone modifications
1
binding sites
1
variant allelic effects
Annotation Category
3
Gene expression levels
2
Genetic variant effects
Annotation type Category
4
RNA-seq
1
Expression arrays
1
snRNA-seq
Available data
2
tsv
File set status
5
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
3
tissue
1
in vitro differentiated cells
1
primary cell
Biosample term
24
islet of Langerhans
19
monocyte
16
epithelial cell of proximal tubule
14
glomerular endothelial cell
13
hepatocyte
11
cardiomyocytes
11
endothelial cell
11
subcutaneous adipose tissue
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
macrophage
9
progenitor cell of endocrine pancreas
9
regulatory T cell
8
EndoC_BH1
8
H1-hESC
8
T-helper 1 cell
8
T-helper 17 cell
8
kidney
8
liver
7
adipose tissue
7
kidney loop of Henle thin ascending limb epithelial cell
7
neural progenitor cell
6
kidney interstitial cell
6
lymphoblastoid cell line
6
pancreatic ductal cell
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
4
T-helper 2 cell
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum
4
endothelial cell of hepatic sinusoid
4
frontal cortex
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
omental fat pad
4
putamen
4
right atrium auricular region
4
substantia nigra
4
tibial nerve
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD8-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
T follicular helper cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
amygdala
3
anterior cingulate cortex
3
blood cell
3
body of pancreas
3
brain
3
caudate nucleus
3
central memory CD8-positive, alpha-beta T cell
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
heart
3
hepatocyte(AFP)
3
hypothalamus
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
memory B cell
3
naive B cel
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
natural killer cell
3
nucleus accumbens
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
skeletal muscle tissue
3
skin of body
3
smooth muscle cell
3
tibial artery
3
visceral abdominal adipose tissue
2
Ammon's horn
2
B cell
2
C1 segment of cervical spinal cord
2
Kupffer cell
2
T cell
2
adipocyte
2
adrenal gland
2
ascending aorta
2
blood
2
cartilage tissue
2
cerebellum (Hemisphere)
2
dorsolateral prefrontal cortex
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
fibroblast
2
gastrocnemius medialis(Muscle - Skeletal)
2
heart left ventricle
2
iPSC derived cell line
2
kidney inner medulla collecting duct intercalated cell
2
left ventricle myocardium
2
leukocyte
2
lung
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
minor salivary gland
2
muscle
2
neutrophil
2
osteoblast
2
ovary
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
renal vesicle
2
retina
2
right lobe of liver
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell of the coronary artery
2
spleen
2
stomach
2
testis
2
type I muscle cell
2
type II muscle cell
2
uterus
2
vagina
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Leydig cell
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Schwann cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
alpha-beta T cell
Organ
3
musculature of body
2
connective tissue
Life stage
2
adult
1
fetal
1
unknown
Date released
2
February, 2021
1
August, 2021
1
February, 2020
1
February, 2024
Software used
3
r
1
deeptools
1
matrix-eQTL
1
qTLtools
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
Showing 5 of 5 results
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Download
FileSet
DSR817XBR
released
Annotation file set
: eQTL annotation of skeletal muscle tissue from PMID:27353450
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259PWV
released
Annotation file set
: Genetic regulators (quantitative trait loci; QTLs) of expression (eQTLs) of human skeletal muscle from FUSION study
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR332ASC
released
Annotation file set
: Gene expression levels of skeletal muscle from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP