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Citing CMDGA
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Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
2
candidate regulatory elements
1
gene expression
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
1
snATAC-seq
1
snRNA-seq
Available data
1
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
15
monocyte
12
hepatocyte
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
8
H1-hESC
8
endothelial cell
7
T-helper 1 cell
7
T-helper 17 cell
7
neural progenitor cell
7
pancreatic ductal cell
7
regulatory T cell
6
fibroblast
6
islet of Langerhans
5
macrophage
4
endothelial cell of hepatic sinusoid
4
heart
4
pancreatic acinar cell
4
pancreatic beta cell
4
pancreatic delta cell
4
right atrium auricular region
4
skeletal muscle fiber
4
smooth muscle cell
4
tibial nerve
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD8-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
Schwann cell
3
T Cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
body of pancreas
3
cardiomyocytes (cardiac muscle cell)
3
central memory CD8-positive, alpha-beta T cell
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epithelial cell of proximal tubule
3
frontal cortex
3
glomerular endothelial cell
3
heart left ventricle
3
hepatocyte(AFP)
3
memory B cell
3
myofibroblast cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic alpha cell
3
pancreatic polypeptide-secreting cell
3
subcutaneous adipose tissue
3
tibial artery
2
cardiac fibroblast
2
muscle of leg
2
B cell
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T cell
2
T follicular helper cell
2
adipocyte
2
basal cell
2
brain
2
cardiac muscle cell
2
cardiac precursors (cardiac muscle cell)
2
caudate nucleus
2
cerebellum
2
cerebellum (Hemisphere)
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
epithelial cell of esophagus
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
goblet cell
2
heart right ventricle
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
mast cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
occipital lobe
2
omental fat pad
2
pancreatic stellate cell
2
putamen
2
renal cortical epithelial cell
2
retina
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Satellite Cells, Skeletal Muscle
1
activated pancreatic stellate cell
1
adipose tissue
1
adrenal gland
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
aorta
1
aortic valve
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
bladder
1
brain pericyte
1
breast - mammary tissue
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle fibroblast
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cervix - ectocervix
1
cervix - endocervix
1
choroid plexus epithelial cell
1
colon - sigmoid
1
colon - transverse
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
dendritic cell
1
diencephalon
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of coronary artery
1
endothelial cell of umbilical vein
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
Organ
2
connective tissue
Date released
2
February, 2024
February, 2021
Software used
1
deeptools
1
deltasvm
1
r
1
samtools
1
umitools
Lab
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
month_released!
February, 2021
Showing 2 of 2 results
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Download
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP