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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
5
target gene predictions
2
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
in vitro differentiated cells
Biosample term
21
brain
21
heart
20
neural progenitor cell
19
CD8-positive, alpha-beta T cell
16
muscle of arm
16
placenta
15
kidney
15
lung
15
muscle of leg
15
stomach
14
large intestine
13
left lung
13
muscle of back
13
small intestine
12
thymus
11
breast cancer cell
11
right lung
10
right kidney
9
gastric cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
Rhabdomyosarcoma
8
adrenal gland
8
neuroblastoma cell
8
spinal cord
7
HepG2
7
diffuse intrinsic pontine glioma
embryonic stem cell
7
esophageal adenocarcinoma
6
B-lymphoblastoid cell line
6
CD4-positive, alpha-beta memory T cell
6
Chondroid Chordoma
6
adipocyte
6
hESC cell
6
heart left ventricle
6
hepatocyte
6
keratinocyte
6
left cardiac atrium
6
liposarcoma
6
liver
6
neuroblastoma cell line
6
squamous cell lung carcinoma
6
trophoblast cell
5
T-cell acute lymphoblastic leukemia
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
melanoma cell
5
osteosarcoma
4
B cell
4
bronchial epithelial cell
4
chorionic villus
4
fibroblast of cardiac tissue
4
foreskin fibroblast
4
heart right ventricle
4
islet of Langerhans
4
mammary epithelial cell
4
muscle of trunk
4
retina
4
rhabdomyosarcoma cell
3
22Rv1
3
CD14-positive, CD16-negative classical monocyte
3
Ewing sarcoma
3
H1-hESC
3
NAMALWA cell
3
SK-N-DZ
3
T-helper 17 cell
3
acute myeloid leukemia
3
cardiac muscle cell
3
chorion membrane
3
common myeloid progenitor, CD34-positive
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
endodermal cell
3
epithelial cell of prostate
3
esophageal squamous cell carcinoma
3
fibroblast of lung
3
glioblastoma cell
3
glioma cell
3
lymphoblast
3
lymphoblastoid cell line
3
mature neutrophil
3
neuronal stem cell
3
neurosphere
3
osteoblast
3
pancreatic ductal adenocarcinoma
3
skeletal muscle myoblast
3
skin fibroblast
2
AG04449 cell
2
AG04450 cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
CD1c-positive myeloid dendritic cell
2
CD8-positive, alpha-beta memory T cell
2
CMK
2
COLO205
2
ESC derived cell line
2
GM06990
2
GM12864
2
GM12865
2
GM12891
2
GM12892
2
GM18507
2
H7-hESC
2
HEK293
2
HK-2 cell
2
HS-SY-2 cell
2
IMR-90
2
JVM-2 cell
2
Jurkat
2
K562
2
KARPAS-422 cell
2
MCF-7
2
MG63
2
Mantle cell lymphoma
2
NT2-D1 cell
2
PC-9
2
RS4-11 cell
2
Rh-4 cell
2
SK-N-MC
2
SK-N-SH
2
T cell
2
Th1 cell
2
U-266 cell
2
WERI-Rb-1
2
Z-138
2
acute myeloid leukemia cell
2
alternatively activated macrophage
2
astrocyte
2
caudate nucleus
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
colon carcinoma
2
colonic mucosa
2
endometriosis
2
epithelial ovarian cancer cell
2
erythroblast
2
erythroid progenitor cell
2
esophageal carcinoma
2
eye
2
fibroblast
2
fibroblast of dermis
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
foreskin melanocyte
2
germinal matrix
2
glioblastoma multiforme cancer stem cell
2
hematopoietic cell
2
hematopoietic multipotent progenitor cell
2
hepatic stellate cell
2
iPS DF 4.7 Cell Line
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
layer of hippocampus
2
left renal cortex interstitium
2
left renal pelvis
2
leukemic stem cell
2
limb
2
lymphocyte
2
mammary gland epithelial cell
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
mesenchymal stem cell
2
mesendoderm
2
mesodermal cell
2
metastatic melanoma
2
monocyte
2
multiple myeloma cell line
2
natural killer cell
2
neutrophil
2
pancreas
2
pancreatic cell line
2
pancreatic ductal cell
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
pulmonary artery endothelial cell
2
regulatory T cell
2
retinal pigment epithelial cell
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle tissue
2
spleen
2
substantia nigra
2
synovial sarcoma cell
2
temporal lobe
2
testis
2
tongue
2
tracheal epithelial cell
2
triple-negative breast cancer
2
trophoblast
2
umbilical cord
2
umbilical cord mesenchymal stem cell line cell
2
urinary bladder cancer cell
2
urothelium cell line
1
143B
1
501A
Organ
6
connective tissue
Life stage
adult
1
unknown
Date released
4
August, 2017
1
February, 2021
1
September, 2022
Software used
5
chromhmm
1
macs
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
6
AMP
RFA
6
AMP
biosample_term_name!
embryonic stem cell
relevant_life_stage!
adult
Showing 6 of 6 results
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Download
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP