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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
5
target gene predictions
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
Target gene links
2
cis-regulatory elements
Annotation type Category
7
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
3
ChIP-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
61
stomach
60
HeLa-S3
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
31
common myeloid progenitor, CD34-positive
30
K562
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
left kidney
26
hematopoietic multipotent progenitor cell
24
CD14-positive monocyte
23
liver
23
spleen
22
spinal cord
19
B cell
19
HFFc6
18
heart left ventricle
17
sigmoid colon
16
trophoblast cell
15
H9
15
MCF-7
15
adipose tissue
15
foreskin keratinocyte
15
psoas muscle
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
muscle of trunk
13
thyroid gland
13
transverse colon
12
chorionic villus
11
CD8-positive, alpha-beta T cell
11
heart right ventricle
11
natural killer cell
10
CD8-positive, alpha-beta memory T cell
10
GM12878
10
Peyer's patch
10
endothelial cell of umbilical vein
10
foreskin fibroblast
10
mononuclear cell
10
neural progenitor cell
10
neurosphere
10
pancreas
10
pituitary stalk
10
testis
10
upper lobe of left lung
9
endocrine pancreas
9
layer of hippocampus
9
pericyte cell
9
retina
9
smooth muscle cell
9
tibial nerve
8
CD4-positive, alpha-beta T cell
8
aorta
8
breast epithelium
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
mesenchymal stem cell
8
right renal pelvis
7
SK-N-SH
7
adipocyte
7
endothelial cell
7
esophagus
7
esophagus muscularis mucosa
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
substantia nigra
7
temporal lobe
7
trophoblast
6
CD4-positive, alpha-beta memory T cell
6
SK-N-DZ
6
T cell
6
T-helper 1 cell
6
angular gyrus
6
ascending aorta
6
cardiac muscle cell
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
olfactory receptor cell
6
prostate gland
6
regulatory T cell
6
skeletal muscle tissue
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T-helper 2 cell
5
T47D
5
cerebellum
5
fibroblast of cardiac tissue
5
fibroblast of lung
5
foreskin melanocyte
5
hepatocyte
5
kidney tubule cell
5
limb
5
mammary gland epithelial cell
5
mesendoderm
5
mesodermal cell
5
right atrium auricular region
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
T-cell
4
bipolar neuron
4
chorion membrane
4
fibroblast
4
fibroblast of dermis
4
frontal cortex
4
iPS DF 19.11
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
macrophage
4
muscle cell
4
naive T cell
4
neural cell
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
H7-hESC
3
HL-60
3
HS-27A
3
HS-5
3
HT1080
Organ
7
connective tissue
Life stage
3
adult
unknown
Date released
4
May, 2021
2
September, 2022
1
February, 2021
Software used
4
abc
2
r
1
encode-ccres
Lab
4
Jesse Engreitz, Stanford University
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
relevant_life_stage!
unknown
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP