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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
target gene predictions
5
accessible chromatin
4
candidate regulatory elements
2
chromatin state
1
binding sites
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
6
Target gene links
2
cis-regulatory elements
Annotation type Category
6
DNase-seq
4
ATAC-seq
4
ChIP-seq
4
H3K27ac ChIP-Seq
Available data
6
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
58
HeLa-S3
41
heart
40
H1-hESC
40
stomach
37
A549
34
brain
33
lung
32
muscle of arm
32
small intestine
31
adrenal gland
30
kidney
29
K562
29
muscle of leg
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
liver
18
renal cortex interstitium
18
renal pelvis
15
heart left ventricle
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
spleen
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
MCF-7
11
pericyte cell
10
heart right ventricle
10
ovary
10
pituitary stalk
9
GM12878
9
H9
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
adipocyte
8
aorta
8
chorionic villus
8
endocrine pancreas
8
endothelial cell of umbilical vein
8
foreskin keratinocyte
8
lymphocyte
8
natural killer cell
8
pancreas
8
smooth muscle cell
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
fibroblast of lung
7
keratinocyte
7
left cardiac atrium
7
mammary gland epithelial cell
7
mature neutrophil
7
mesenchymal stem cell
7
regulatory T cell
7
tibial nerve
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
angular gyrus
6
caudate nucleus
6
chorion membrane
6
coronary artery
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle tissue
6
temporal lobe
6
testis
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
SK-N-SH
5
alternatively activated macrophage
5
ascending aorta
5
astrocyte
5
breast epithelium
5
colon epithelial cell
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
neutrophil
5
right cardiac atrium
5
skeletal muscle myoblast
5
skin fibroblast
5
thoracic aorta
5
tibial artery
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
HepG2
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
bronchial epithelial cell
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
iPSC derived cell line
4
inflammatory macrophage
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
stomach smooth muscle
4
substantia nigra
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
germinal matrix
3
iPS DF 19.11
3
islet of Langerhans
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
type B pancreatic cell
3
uterus
2
8988T
Organ
8
connective tissue
Life stage
2
adult
2
unknown
Date released
4
May, 2021
4
September, 2022
Software used
4
abc
2
chromhmm
2
r
Lab
4
AMP-T2D consortium
4
Jesse Engreitz, Stanford University
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
lab.title!
Stephen Parker, UMich
Showing 8 of 8 results
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Download
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP