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Annotation type
1
variant allelic effects
0
target gene predictions
Annotation Category
1
Genetic variant effects
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
in vitro differentiated cells
1
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
brain
17
lung
17
muscle of arm
17
small intestine
15
kidney
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
right kidney
11
right lung
10
B cell
10
liver
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
heart left ventricle
9
left kidney
8
GM12878
8
H9
8
psoas muscle
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
lymphocyte
7
sigmoid colon
6
MCF-7
6
T cell
6
body of pancreas
6
fibroblast
6
heart right ventricle
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
pancreas
5
coronary artery
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
macrophage
5
muscle of trunk
5
thyroid gland
5
tibial nerve
5
transverse colon
5
trophoblast cell
4
CyT49
4
HUES8
4
aorta
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatocyte
4
iPSC derived cell line
4
keratinocyte
4
mammary gland epithelial cell
4
natural killer cell
4
retina
4
right atrium auricular region
4
tibial artery
3
CD8-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
breast epithelium
3
cardiac muscle cell
3
chorion membrane
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
myofibroblast cell
3
naive T cell
3
neurosphere
3
neutrophil
3
regulatory T cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
Schwann cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
astrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
bronchial epithelial cell
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endothelial cell
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
hepatic stellate cell
2
iPS DF 19.11
2
islet of Langerhans
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
monocyte
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
occipital lobe
2
omental fat pad
2
osteoblast
2
pancreatic acinar cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
pons
2
prostate gland
Organ
1
connective tissue
Date released
1
February, 2024
Software used
1
deltasvm
Lab
1
Bing Ren, UCSD
Project
1
AMP
RFA
1
AMP
biosample_type!
in vitro differentiated cells
Showing 1 of 1 results
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Download
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP