Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
Target gene links
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
6
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
3
ChIP-seq
1
snATAC-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
89
monocyte
55
HeLa-S3
40
H1-hESC
35
CD8-positive, alpha-beta T cell
24
K562
23
heart
22
stomach
21
neural progenitor cell
20
A549
20
brain
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
kidney
17
lung
17
muscle of arm
17
placenta
17
small intestine
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
left lung
13
muscle of back
12
B cell
12
fibroblast
12
liver
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
right kidney
10
endothelial cell
10
heart left ventricle
10
hepatocyte
10
renal cortex interstitium
10
renal pelvis
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
adipose tissue
9
gastric cancer cell
9
keratinocyte
9
left kidney
9
pericyte cell
9
pituitary stalk
9
spinal cord
8
H9
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
adipocyte
8
lymphocyte
8
macrophage
8
neuroblastoma cell
8
psoas muscle
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
T cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
natural killer cell
7
sigmoid colon
7
smooth muscle cell
7
spleen
6
Chondroid Chordoma
6
body of pancreas
6
cardiac muscle cell
6
dendritic cell
6
fibroblast of cardiac tissue
6
hESC cell
6
heart right ventricle
6
liposarcoma
6
mammary gland epithelial cell
6
mononuclear cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
ovary
6
pancreas
6
squamous cell lung carcinoma
6
trophoblast cell
5
CyT49
5
T-cell acute lymphoblastic leukemia
5
astrocyte
5
caudate nucleus
5
coronary artery
5
endothelial cell of umbilical vein
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
melanoma cell
5
mesenchymal stem cell
5
muscle of trunk
5
osteosarcoma
5
pancreatic acinar cell
5
pancreatic delta cell
5
pancreatic ductal cell
5
retina
4
HUES8
4
Jurkat
4
aorta
4
bronchial epithelial cell
4
cardiomyocytes (cardiac muscle cell)
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
hepatic stellate cell
4
iPSC derived cell line
4
layer of hippocampus
4
mammary epithelial cell
4
mesendoderm
4
neuronal stem cell
4
osteoblast
4
pancreatic beta cell
4
regulatory T cell
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
tibial nerve
3
22Rv1
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
EndoC_BH1
3
Ewing sarcoma
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
acute myeloid leukemia
3
ascending aorta
3
basal cell
3
breast epithelium
3
cerebellum
3
chorion membrane
3
choroid plexus epithelial cell
3
colonic mucosa
3
cortical cell of adrenal gland
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
esophageal squamous cell carcinoma
3
esophagus
3
frontal cortex
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
lymphoblast
3
lymphoblastoid cell line
3
mast cell
3
midbrain
3
myofibroblast cell
3
naive T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic ductal adenocarcinoma
3
prostate gland
3
putamen
3
right atrium auricular region
3
skeletal muscle tissue
3
tibial artery
2
cardiac fibroblast
2
muscle of leg
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
Organ
8
connective tissue
Life stage
1
adult
1
unknown
Date released
4
May, 2021
2
September, 2022
1
February, 2021
1
February, 2024
Software used
4
abc
2
r
1
deltasvm
1
macs
Lab
4
Jesse Engreitz, Stanford University
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
8
AMP
RFA
8
AMP
biosample_term_name!
fibroblast of breast
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP