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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
accessible chromatin
6
chromatin state
4
candidate regulatory elements
4
target gene predictions
2
gene expression
2
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
4
Target gene links
2
Gene expression levels
Annotation type Category
6
ATAC-seq
6
DNase-seq
H3K27ac ChIP-Seq
2
ChIP-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
Biosample term
54
HeLa-S3
46
H1-hESC
23
heart
22
K562
21
kidney
20
stomach
19
HFFc6
18
A549
18
lung
17
brain
17
endothelial cell
17
epithelial cell of proximal tubule
17
monocyte
16
adrenal gland
16
hepatocyte
16
muscle of arm
16
small intestine
15
glomerular endothelial cell
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
12
islet of Langerhans
12
neural progenitor cell
11
B cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
regulatory T cell
11
right lung
10
T-helper 1 cell
10
T-helper 17 cell
10
adipose tissue
10
liver
10
pericyte cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
smooth muscle cell
8
heart left ventricle
8
pancreatic ductal cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
cardiomyocytes (cardiac muscle cell)
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
pancreatic delta cell
7
psoas muscle
7
spinal cord
6
CD8-positive, alpha-beta T cell
6
T-helper 2 cell
6
body of pancreas
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
ovary
6
pancreatic alpha cell
6
pancreatic beta cell
6
sigmoid colon
5
MCF-7
5
aorta
5
cardiac precursors (cardiac muscle cell)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
macrophage
5
memory B cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic acinar cell
5
subcutaneous adipose tissue
5
tibial nerve
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T cell
4
adipocyte
4
adult endothelial progenitor cell
4
astrocyte
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
frontal cortex
4
gamma-delta T cell
4
gastrocnemius medialis
4
iPSC derived cell line
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
nephron progenitor
4
omental fat pad
4
pancreas
4
retina
4
right atrium auricular region
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
testis
4
thyroid gland
4
transverse colon
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD4-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HCT116
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Peyer's patch
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
ascending aorta
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
esophagus
3
fibroblast of dermis
3
fibroblast of lung
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
Organ
4
connective tissue
2
epithelium
2
lung
Life stage
2
adult
1
unknown
Date released
2
November, 2021
2
September, 2022
1
February, 2021
1
February, 2024
Software used
4
r
2
abc
1
deeptools
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
4
AMP
2
ENCODE
RFA
3
AMP
2
ENCODE3
1
AMP2
annotation_type_category!
H3K27ac ChIP-Seq
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR588HKS
released
Annotation file set
: Target gene predictions of Alverolar Type 2,Immune from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR775ZRO
released
Annotation file set
: Target gene predictions of Alveolar Type 2 (AT2) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP