Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
ChIP-seq
11
DNase-seq
7
ATAC-seq
H3K27ac ChIP-Seq
3
snATAC-seq
Available data
7
bed bed3+
2
bigWig
1
tsv
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
primary cell
Biosample term
51
HeLa-S3
38
H1-hESC
28
endothelial cell
26
fibroblast
24
retina
21
monocyte
20
macrophage
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
19
smooth muscle cell
17
K562
13
excitatory neuron
12
kidney
12
pancreatic beta cell
11
hepatocyte
11
islet of Langerhans
11
neural progenitor cell
11
pancreatic alpha cell
10
EndoC_BH1
10
astrocyte
10
pancreatic delta cell
10
pancreatic ductal cell
9
B cell
9
T cell
9
pancreatic acinar cell
9
retinal pigment epithelial cell
8
CD8-positive, alpha-beta T cell
8
glutamatergic neuron
8
heart
8
pancreas
7
GM12878
7
adipocyte
7
heart left ventricle
7
liver
7
skeletal muscle fiber
7
type II pneumocyte
6
H9
6
SGBS preadipocytes
6
colon epithelial cell
6
coronary artery
6
cortical cell of adrenal gland
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
erythroblast
6
lymphocyte
6
memory B cell
6
mesenchymal stem cell
6
olfactory receptor cell
6
regulatory T cell
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
HUES8
5
adipose tissue
5
basal cell
5
chondrocyte
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
inhibitory neuron
5
keratinocyte
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
natural killer cell
5
osteoblast
5
pancreatic stellate cell
5
right atrium auricular region
5
tibial artery
5
tibial nerve
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
blood vessel smooth muscle cell
4
cardiac muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
glomerular visceral epithelial cell
4
heart right ventricle
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myofibroblast cell
4
pancreatic polypeptide-secreting cell
4
psoas muscle
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
subcutaneous adipose tissue
4
type I pneumocyte
3
Ammon's horn
3
HepG2
3
Schwann cell
3
T-helper 1 cell
3
activated CD4-positive, alpha-beta T cell
3
brain
3
brain pericyte
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
endothelial cell of umbilical vein
3
enteric neuron
3
frontal cortex
3
goblet cell
3
hepatic stellate cell
3
mast cell
3
naive t cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
parietal cell
3
peptic cell
3
plasma cell
3
plasmacytoid dendritic cell
3
renal cortical epithelial cell
3
renal pelvis
3
schwann cell
3
spleen
3
stomach
3
thymus
3
thyroid follicular cell
3
type B pancreatic cell
2
hindlimb muscle
2
muscle of leg
2
GM18507
2
GM19240
2
HCT116
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adrenal gland
2
alveolar macrophage
2
aorta
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell of epidermis
2
bone marrow cell
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac precursors (cardiac muscle cell)
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast cell line
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
left renal pelvis
2
leukocyte
2
luteal cell
2
lymphocyte of B lineage (iPSC)
2
mature NK T cell
2
mature natural killer cell
2
medulla oblongata
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesendoderm
2
microglial cell
2
midbrain
2
muscle of arm
2
muscle of leg
2
myoepithelial cell
2
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
Organ
7
connective tissue
Date released
3
February, 2024
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
6
macs
1
deltasvm
Lab
4
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
1
ENCODE
RFA
5
AMP
1
AMP2
1
ENCODE3
annotation_type_category!
ChIP-seq
H3K27ac ChIP-Seq
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP