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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
gene expression
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
1
Genetic variant effects
Annotation type Category
ChIP-seq
11
DNase-seq
ATAC-seq
4
H3K27ac ChIP-Seq
3
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
bigWig
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
Biosample term
51
HeLa-S3
46
H1-hESC
33
islet of Langerhans
31
endothelial cell
28
macrophage
26
monocyte
24
fibroblast
19
HFFc6
18
epithelial cell of proximal tubule
18
hepatocyte
18
pancreatic ductal cell
17
K562
17
glomerular endothelial cell
16
induced pluripotent stem cell
16
pancreatic alpha cell
16
pancreatic beta cell
15
pancreatic delta cell
15
smooth muscle cell
15
subcutaneous adipose tissue
14
pancreatic acinar cell
13
excitatory neuron
13
regulatory T cell
12
EndoC_BH1
12
kidney
12
liver
11
T cell
11
cardiomyocytes
10
frontal cortex
10
heart
10
pancreatic stellate cell
10
pericyte cell
10
putamen
10
right atrium auricular region
10
tibial nerve
9
B cell
9
T-helper 1 cell
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
9
skeletal muscle fiber
9
tibial artery
8
Ammon's horn
8
CD8-positive, alpha-beta T cell
8
T-helper 17 cell
8
adipose tissue
8
astrocyte
8
caudate nucleus
8
cerebellum
8
coronary artery
8
glomerular visceral epithelial cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
neural progenitor cell
8
omental fat pad
8
pancreas
7
GM12878
7
ascending aorta
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
heart left ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
natural killer cell
7
skeletal muscle satellite cell
7
substantia nigra
6
H9
6
adipocyte
6
amygdala
6
anterior cingulate cortex
6
brain
6
cerebellum (Hemisphere)
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
erythroblast
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphocyte
6
memory B cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
cardiac precursors (cardiac muscle cell)
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
hepatic stellate cell
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
neutrophil
5
osteoblast
5
pancreatic endothelial cell
5
retina
5
right lobe of liver
5
stomach
5
type II pneumocyte
4
CyT49
4
Schwann cell
4
T-helper 2 cell
4
activated CD4-positive, alpha-beta T cell
4
adrenal gland
4
adult endothelial progenitor cell
4
basal cell
4
bone tissue
4
cartilage tissue
4
cortical cell of adrenal gland
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
megakaryocyte
4
myofibroblast cell
4
naive B cell
4
nephron progenitor
4
occipital lobe
4
ovary
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
renal cortical epithelial cell
4
skeletal muscle myoblast
4
spleen
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
T follicular helper cell
3
activated CD8-positive, alpha-beta T cell
3
aorta
Organ
6
connective tissue
Life stage
1
adult
Date released
3
February, 2024
1
February, 2021
1
June, 2020
1
November, 2021
Software used
3
macs
2
r
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
5
AMP
1
ENCODE
RFA
3
AMP
2
AMP2
1
ENCODE3
annotation_type_category!
ChIP-seq
ATAC-seq
Showing 6 of 6 results
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP