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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
39
A549
30
common myeloid progenitor, CD34-positive
26
hematopoietic multipotent progenitor cell
18
adrenal gland
17
B cell
16
stomach
15
spleen
14
MCF-7
14
liver
13
K562
13
adipose tissue
12
body of pancreas
12
gastrocnemius medialis
12
sigmoid colon
12
thyroid gland
12
transverse colon
11
tibial nerve
10
CD8-positive, alpha-beta memory T cell
10
Peyer's patch
10
caudate nucleus
10
mononuclear cell
10
pancreas
10
upper lobe of left lung
9
CD14-positive monocyte
9
endocrine pancreas
9
layer of hippocampus
9
natural killer cell
9
ovary
8
HeLa-S3
8
esophagus squamous epithelium
8
heart left ventricle
8
lower leg skin
8
omental fat pad
8
psoas muscle
7
ascending aorta
7
breast epithelium
7
esophagus muscularis mucosa
7
parathyroid adenoma
7
substantia nigra
7
temporal lobe
6
CD4-positive, alpha-beta memory T cell
6
CD8-positive, alpha-beta T cell
6
T cell
6
T-helper 1 cell
6
angular gyrus
6
aorta
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
duodenal mucosa
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
kidney
6
kidney tubule cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
prostate gland
6
right atrium auricular region
6
skeletal muscle tissue
6
small intestine
6
stomach smooth muscle
6
testis
6
thoracic aorta
6
tibial artery
6
vagina
5
CD4-positive, alpha-beta T cell
5
LNCaP clone FGC
5
T-helper 2 cell
5
T47D
5
frontal cortex
5
globus pallidus
5
middle frontal gyrus
5
putamen
5
regulatory T cell
5
subcutaneous abdominal adipose tissue
4
Ammon's horn
4
Brodmann (1909) area 46
4
cerebellar cortex
4
dermis blood vessel endothelial cell
4
fibroblast of lung
4
hepatic stellate cell
4
kidney glomerular epithelial cell
4
lung
4
mammary gland epithelial cell
4
medulla oblongata
4
midbrain
4
muscle cell
4
naive T cell
4
peripheral blood mononuclear cell
4
pons
4
superior temporal gyrus
4
uterus
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
Caki2
3
DOHH2
3
GM04503
3
GM04504
3
GM12878
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
KBM-7
3
KMS-11
3
LHCN-M2
3
Loucy
3
M059J
3
MCF 10A
3
MM.1S
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJSA1
3
SK-MEL-5
3
SU-DHL-6
3
SW480
3
adipocyte
3
bipolar neuron
3
fibroblast of dermis
3
heart
3
heart right ventricle
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
mesenchymal stem cell
3
mucosa of stomach
3
occipital lobe
3
right cardiac atrium
3
right lobe of liver
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
3
suprapubic skin
3
urinary bladder
2
cardiac fibroblast
2
8988T
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AG20443
2
COLO829
2
Caco-2 cell
2
GM10248
2
GM10266
2
GM12875
2
GM19238
2
GM19239
2
GM19240
2
HPDE6-E6E7
2
HuH-7
2
HuH-7.5
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
NCI-H226 cell
2
T-cell
2
VCaP cell
2
fibroblast of cardiac tissue
2
iPS-NIHi11
2
iPS-NIHi7
2
inferior parietal cortex
2
luminal epithelial cell of mammary gland
2
mammary epithelial cell
2
mammary stem cell
2
middle frontal area 46
2
olfactory neurosphere cell line
2
rectum smooth muscle tissue
2
renal cell carcinoma
2
subcutaneous adipose tissue
1
A-673 cell
1
AG09309
1
AG09319
Organ
3
connective tissue
Life stage
3
adult
3
unknown
Date released
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP