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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
snATAC-seq
Available data
2
bed bed9
1
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
26
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
tissue
2
in vitro differentiated cells
1
primary cell
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
22
K562
22
fibroblast
19
HFFc6
19
macrophage
19
pericyte cell
18
A549
18
endothelial cell
18
hepatocyte
16
endothelial cell of hepatic sinusoid
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
11
B cell
11
T cell
11
astrocyte
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
colon epithelial cell
7
lymphocyte
6
HepG2
6
fibroblast of cardiac tissue
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
skeletal muscle satellite cell
5
MCF-7
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
pancreatic acinar cell
5
regulatory T cell
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
glutamatergic neuron
4
natural killer cell
4
osteoblast
4
pancreatic beta cell
4
pancreatic ductal cell
4
skin fibroblast
4
smooth muscle cell of the esophagus
3
cardiac fibroblast
3
CD4-positive helper T cell
3
HCT116
3
adipocyte
3
blood cell
3
cardiac muscle cell
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
mesenchymal stem cell
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
pancreatic alpha cell
3
retinal pigment epithelial cell
3
schwann cell
3
skeletal muscle fiber
3
type I pneumocyte
2
22Rv1
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
bronchial epithelial cell
2
cardiac endothelial cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
colon goblet cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
2
endodermal cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
fat cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of the aortic adventitia
2
foreskin fibroblast
2
foveolar cell of stomach
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
luteal cell
2
mast cell
2
mature NK T cell
2
melanocyte
2
memory B cell
2
mesangial cell
2
muscle
2
muscle cell
2
myoepithelial cell
2
myoepithelial cell of mammary gland
2
naive t cell
2
neuron
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic delta cell
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
regular atrial cardiac myocyte
2
renal cortical epithelial cell
2
respiratory goblet cell
2
skeletal muscle cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
small intestine goblet cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the coronary artery
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
2
type II muscle cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
Organ
3
connective tissue
Life stage
1
adult
1
unknown
Date released
2
September, 2022
1
November, 2021
Software used
2
chromhmm
1
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
biosample_type!
tissue
Showing 3 of 3 results
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE