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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
102
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
25
adrenal gland
25
liver
24
adipose tissue
23
B cell
23
retina
22
body of pancreas
22
stomach
21
tibial nerve
20
pigmented layer of retina
20
spleen
19
K562
19
MCF-7
18
CD8-positive, alpha-beta T cell
18
caudate nucleus
18
omental fat pad
17
islet of Langerhans
subcutaneous adipose tissue
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
ascending aorta
15
epithelial cell of proximal tubule
15
heart left ventricle
15
mononuclear cell
14
coronary artery
14
pancreas
14
right atrium auricular region
14
substantia nigra
14
tibial artery
13
Peyer's patch
13
cerebellum
13
natural killer cell
13
ovary
13
upper lobe of left lung
12
CD14-positive monocyte
12
T-helper 1 cell
12
endocrine pancreas
12
frontal cortex
12
glomerular endothelial cell
12
layer of hippocampus
12
psoas muscle
12
regulatory T cell
11
HeLa-S3
11
aorta
11
putamen
11
temporal lobe
10
Ammon's horn
10
angular gyrus
10
esophagus squamous epithelium
10
lower leg skin
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
kidney tubule cell
9
parathyroid adenoma
9
right lobe of liver
9
skeletal muscle tissue
9
testis
9
thoracic aorta
9
vagina
8
CD4-positive, alpha-beta T cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
hepatocyte
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
small intestine
8
stomach smooth muscle
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
Brodmann (1909) area 46
6
globus pallidus
6
hepatic stellate cell
6
lung
6
mammary gland epithelial cell
6
middle frontal gyrus
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
6
skeletal muscle satellite cell
6
uterus
5
C1 segment of cervical spinal cord
5
GM12878
5
adipocyte
5
amygdala
5
anterior cingulate cortex
5
cerebellar cortex
5
cerebellum (Hemisphere)
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart
5
heart right ventricle
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
neutrophil
5
nucleus accumbens
5
pancreatic alpha cell
5
pancreatic beta cell
5
pons
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
bipolar neuron
4
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell
4
fibroblast of dermis
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
mucosa of stomach
4
occipital lobe
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
Organ
5
connective tissue
Life stage
5
adult
4
unknown
Date released
3
September, 2022
2
February, 2021
Software used
3
r
1
chromhmm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
subcutaneous adipose tissue
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP