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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
snATAC-seq
1
snRNA-seq
Available data
3
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
in vitro differentiated cells
4
primary cell
Biosample term
131
monocyte
55
HeLa-S3
51
H1-hESC
50
CD8-positive, alpha-beta T cell
44
islet of Langerhans
40
endothelial cell
39
kidney
33
heart
32
macrophage
31
retina
30
fibroblast
30
hepatocyte
29
stomach
27
liver
25
brain
23
EndoC_BH1
23
K562
22
pancreatic ductal cell
21
subcutaneous adipose tissue
20
adrenal gland
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pigmented layer of retina
20
smooth muscle cell
19
CD14-positive monocyte
19
HFFc6
19
heart left ventricle
19
muscle of arm
19
muscle of leg
19
pericyte cell
18
glomerular endothelial cell
18
placenta
18
regulatory T cell
18
small intestine
17
large intestine
17
pancreatic acinar cell
17
pancreatic beta cell
16
B cell
16
endothelial cell of hepatic sinusoid
16
spleen
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
pancreatic alpha cell
15
tibial nerve
14
T-helper 1 cell
14
astrocyte
14
coronary artery
14
pancreas
14
spinal cord
14
thymus
13
GM12878
13
H9
13
caudate nucleus
13
endothelial cell of umbilical vein
13
left lung
13
osteoblast
13
renal cortex interstitium
13
renal pelvis
12
adipose tissue
12
foreskin fibroblast
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
pancreatic delta cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
T-helper 17 cell
11
body of pancreas
11
erythroblast
11
excitatory neuron
11
omental fat pad
11
putamen
11
tibial artery
10
MCF-7
10
Rhabdomyosarcoma
10
T cell
10
frontal cortex
10
gastric cancer cell
10
natural killer cell
10
pancreatic stellate cell
10
right kidney
10
skeletal muscle satellite cell
9
Ammon's horn
9
HepG2
9
cardiac muscle cell
9
heart right ventricle
9
liposarcoma
9
ovary
9
skeletal muscle myoblast
9
testis
8
A549
8
B-lymphoblastoid cell line
8
ascending aorta
8
fibroblast cell line
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
neutrophil
8
pituitary stalk
8
skeletal muscle fiber
7
Jurkat
7
amygdala
7
cerebellum
7
hepatic stellate cell
7
mature neutrophil
7
memory B cell
7
mesenchymal stem cell
7
temporal lobe
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
diffuse intrinsic pontine glioma
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hypothalamus
6
iPSC derived cell line
6
induced pluripotent stem cell
6
left kidney
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
plasma cell
6
sigmoid colon
6
smooth muscle cell of the coronary artery
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Chondroid Chordoma
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HAP-1
5
HCT-116 cell
5
KARPAS-422 cell
5
Lymphatic Endothelial Cell
5
Natural Killer T Cell
5
Non-Classical Monocyte
5
PC-9
5
T-helper 2 cell
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
enterocyte
5
esophageal adenocarcinoma
5
glutamatergic neuron
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mast cell
5
mesangial cell
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
transverse colon
5
trophoblast cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
Organ
4
connective tissue
Date released
3
February, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
deltasvm
1
r
1
samtools
1
umitools
Lab
2
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
3
AMP
1
ENCODE
RFA
2
AMP2
1
AMP
1
ENCODE3
biosample_term_name!
CD1c-positive myeloid dendritic cell
month_released!
September, 2022
biosample_type!
in vitro differentiated cells
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP