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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
14
ChIP-seq
11
DNase-seq
7
ATAC-seq
4
H3K27ac ChIP-Seq
3
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
3
bed bed3+
1
bigWig
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
30
islet of Langerhans
24
fibroblast
24
macrophage
23
endothelial cell
22
monocyte
16
induced pluripotent stem cell
15
subcutaneous adipose tissue
14
smooth muscle cell
13
excitatory neuron
12
hepatocyte
11
EndoC_BH1
11
cardiomyocytes
11
pancreatic alpha cell
11
regulatory T cell
10
T cell
10
pancreatic beta cell
10
pericyte cell
9
pancreatic delta cell
8
H1-hESC
8
T-helper 1 cell
8
astrocyte
8
kidney
7
T-helper 17 cell
7
cerebellum
7
frontal cortex
7
neural progenitor cell
7
omental fat pad
7
pancreatic acinar cell
7
putamen
7
right atrium auricular region
7
skeletal muscle fiber
7
substantia nigra
7
tibial nerve
6
B cell
6
amygdala
6
anterior cingulate cortex
6
body of pancreas
6
caudate nucleus
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
hypothalamus
6
liver
6
lymphoblastoid cell line
6
memory B cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
pancreatic ductal cell
6
skeletal muscle satellite cell
6
tibial artery
5
Ammon's horn
5
C1 segment of cervical spinal cord
5
CD8-positive, alpha-beta T cell
5
adipose tissue
5
ascending aorta
5
cerebellum (Hemisphere)
5
erythroblast
5
gastrocnemius medialis(Muscle - Skeletal)
5
inhibitory neuron
5
left ventricle myocardium
5
right lobe of liver
5
type I muscle cell
5
type II muscle cell
5
type II pneumocyte
4
T-helper 2 cell
4
adipocyte
4
basal cell
4
cardiac precursors (cardiac muscle cell)
4
cortical cell of adrenal gland
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
mesenchymal stem cell
4
myofibroblast cell
4
natural killer cell
4
pancreatic polypeptide-secreting cell
4
visceral abdominal adipose tissue
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
bone tissue
3
brain
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
effector memory CD8-positive, alpha-beta T cell
3
endothelial cell of lymphatic vessel
3
goblet cell
3
keratinocyte
3
megakaryocyte
3
mesangial cell
3
mesothelial cell
3
naive B cel
3
naive B cell
3
neutrophil
3
pancreatic stellate cell
3
skeletal muscle tissue
3
skin of body
3
smooth muscle cell of the coronary artery
3
type I pneumocyte
2
Muller cell
2
Schwann cell
2
adrenal gland
2
articular chondrocyte
2
blood
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiomyocytes (cardiac muscle cell)
2
cartilage tissue
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
dorsolateral prefrontal cortex
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
gamma-delta T cell
2
glial cell
2
glutamatergic neuron
2
heart
2
heart left ventricle
2
iPSC derived cell line
2
leukocyte
2
luminal epithelial cell of mammary gland
2
lung
2
mammary gland epithelial cell
2
mast cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
metanephros
2
microglial cell
2
minor salivary gland
2
muscle
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
oligodendrocyte precursor cell
2
osteoblast
2
ovary
2
parietal cell
2
peptic cell
2
plasmacytoid dendritic cell
2
retina
2
schwann cell
2
smooth muscle cell of the esophagus
2
spleen
2
stellate neuron
2
stomach
2
testis
2
thyroid follicular cell
2
uterus
2
vagina
2
vascular associated smooth muscle cell
1
B-1a B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD4-positive, alpha-beta T cell
1
Leydig cell
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
S-shaped body
1
Satellite Cells, Skeletal Muscle
1
abdominal aorta artery
1
alveolar macrophage
1
aorta wall
1
basal cell of epidermis
1
bladder
1
breast
1
breast - mammary tissue
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle fibroblast
1
cell
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cerebellar hemisphere
1
cervix - ectocervix
1
cervix - endocervix
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon - sigmoid
1
colon - transverse
1
colon goblet cell
1
colon sigmoid
1
cortex
1
cortex of kidney
1
diencephalon
1
eccrine cell
Organ
4
connective tissue
Life stage
1
adult
Date released
2
February, 2024
1
February, 2021
1
November, 2021
Software used
2
macs
1
deltasvm
1
r
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
1
ENCODE
RFA
2
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
fibroblast of pulmonary artery
Showing 4 of 4 results
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP