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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
8
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
Available data
8
bed bed3+
2
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
primary cell
Biosample term
105
monocyte
33
CD8-positive, alpha-beta T cell
30
neural progenitor cell
25
retina
20
breast cancer cell
20
pigmented layer of retina
19
endothelial cell
19
fibroblast
14
macrophage
13
excitatory neuron
13
hepatocyte
12
endothelial cell of hepatic sinusoid
12
kidney
12
neuroblastoma cell
11
embryonic stem cell
11
gastric cancer cell
11
retinal pigment epithelial cell
10
EndoC_BH1
10
Rhabdomyosarcoma
10
diffuse intrinsic pontine glioma
10
pancreatic ductal cell
9
astrocyte
9
keratinocyte
9
liposarcoma
8
HepG2
8
T-cell acute lymphoblastic leukemia
8
adipocyte
8
esophageal adenocarcinoma
8
fibroblast cell line
pancreatic beta cell
8
pericyte cell
8
smooth muscle cell
7
B cell
7
B-lymphoblastoid cell line
7
T cell
7
acute myeloid leukemia
7
chondrocyte
7
fibroblast of cardiac tissue
7
hESC cell
7
heart
7
islet of Langerhans
7
liver
7
mammary epithelial cell
7
pancreatic acinar cell
6
Chondroid Chordoma
6
Rh-4 cell
6
SGBS preadipocytes
6
brain
6
cardiac muscle cell
6
glioblastoma multiforme cancer stem cell
6
glutamatergic neuron
6
hepatic stellate cell
6
lymphoblastoid cell line
6
melanoma
6
neuroblastoma cell line
6
neuronal stem cell
6
osteoblast
6
pancreas
5
Ewing sarcoma
5
Jurkat
5
MCF-7
5
RS4-11 cell
5
Th1 cell
5
bronchial epithelial cell
5
dermal fibroblast
5
diffuse large B-cell lymphoma
5
erythroblast
5
esophageal squamous cell carcinoma
5
foreskin fibroblast
5
mesenchymal stem cell
5
osteosarcoma
5
prostate cancer cell line
4
B-lymphocyte
4
COLO205
4
HS-SY-2 cell
4
Mantle cell lymphoma
4
Tumor-derived cell line
4
acute myeloid leukemia cell
4
adipose-derived stem cell
4
aortic endothelial cell
4
choroid plexus epithelial cell
4
colon adenocarcinoma
4
erythroid cell
4
erythroid progenitor cell
4
glial cell
4
glioblastoma cell
4
glioma cell
4
heart left ventricle
4
immortal neural cell line cell
4
inhibitory neuron
4
lung fibroblast cell line
4
mammary gland epithelial cell
4
melanoma cell
4
pancreatic alpha cell
4
pancreatic delta cell
4
regulatory T cell
4
skeletal muscle satellite cell
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
3
cardiac fibroblast
3
786-O cell
3
A-673 cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
Caco-2 cell
3
D341 Med cell
3
G-401 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
GM23248
3
H1-hESC
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
HT-29
3
HeLa cell
3
HuH-7
3
IMR-90
3
Ishikawa
3
K562
3
KARPAS-422 cell
3
Kasumi-1
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
MDA-MB-231 cell
3
MG63
3
MM.1S
3
MOLM-13 cell
3
Myoblasts
3
NAMALWA cell
3
NB-4 cell
3
NCCIT cell
3
NHBE cell
3
NHDF cell
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
OCI-AML3
3
OCI-LY7
3
PA-TU-8988T cell
3
PANC-1 cell
3
PC-3
3
PC-9
3
REH cell
3
RKO
3
RPMI8226
3
RWPE1
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
SW480
3
Saos-2 cell
3
T-47D cell
3
Th17 cell
3
U-266 cell
3
U-87 MG
3
U2OS
3
U937
3
WERI-Rb-1
3
WI-38 cell
3
ZR-75-1 cell
3
adipose tissue
3
aortic adventitial fibroblast
3
bone marrow cell
3
cardiac myocyte cell derived cell line
3
caudate nucleus
3
chronic lymphocytic leukemia cell
3
colon cancer cell line
3
colon epithelial cell
3
coronary artery
3
cortex of kidney
3
cortical cell of adrenal gland
3
enterocyte
3
epithelial cell of prostate
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
foreskin keratinocyte
3
foreskin melanocyte
3
gabaergic neuron
Organ
8
connective tissue
Date released
2
February, 2021
2
February, 2024
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
8
macs
6
chromhmm
6
r
4
abc
2
encode-ccres
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
7
AMP
1
ENCODE
RFA
6
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
glomerular visceral epithelial cell
pancreatic beta cell
Showing 8 of 8 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP