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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
Annotation Category
4
Target gene links
3
cis-regulatory elements
Annotation type Category
8
ChIP-seq
7
ATAC-seq
7
DNase-seq
4
H3K27ac ChIP-Seq
3
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
26
stomach
24
heart
19
CD14-positive monocyte
19
kidney
19
muscle of arm
17
adrenal gland
17
large intestine
17
lung
17
muscle of leg
16
brain
16
small intestine
15
common myeloid progenitor, CD34-positive
15
muscle of back
14
placenta
13
left lung
13
renal cortex interstitium
13
renal pelvis
12
right kidney
12
right lung
11
spleen
11
thymus
10
CD8-positive, alpha-beta T cell
10
hematopoietic multipotent progenitor cell
10
pituitary stalk
10
spinal cord
9
B cell
9
heart left ventricle
9
left kidney
9
pancreas
8
CD4-positive, alpha-beta T cell
8
cardiac muscle cell
8
endothelial cell of umbilical vein
8
foreskin keratinocyte
8
liver
7
H9
7
adipocyte
7
foreskin fibroblast
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T-cell
6
body of pancreas
6
dendritic cell
6
gastrocnemius medialis
6
left renal cortex interstitium
6
left renal pelvis
6
ovary
6
retina
6
right renal pelvis
6
skeletal muscle myoblast
6
thyroid gland
6
tibial nerve
6
transverse colon
5
cardiac fibroblast
5
A549
5
CD4-positive, alpha-beta memory T cell
5
Peyer's patch
5
breast epithelium
5
caudate nucleus
5
esophagus squamous epithelium
5
heart right ventricle
5
hepatocyte
5
mammary epithelial cell
5
muscle of trunk
5
natural killer cell
5
osteoblast
5
psoas muscle
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
testis
5
upper lobe of left lung
4
LNCAP
4
T-helper 1 cell
4
WI38
4
ascending aorta
4
brain pericyte
4
chorionic villus
4
choroid plexus epithelial cell
4
coronary artery
4
dermis blood vessel endothelial cell
4
epithelial cell of prostate
4
esophagus muscularis mucosa
4
fibroblast of lung
4
foreskin melanocyte
4
gastroesophageal sphincter
4
globus pallidus
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
lower leg skin
4
mesenchymal stem cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neuronal stem cell
4
neurosphere
4
omental fat pad
4
peripheral blood mononuclear cell
4
putamen
4
regulatory T cell
4
renal cortical epithelial cell
4
right atrium auricular region
4
tibial artery
4
uterus
3
Ammon's horn
3
CD4-positive helper T cell
3
GM12878
3
HAP-1
3
HEK293
3
HT-29
3
HeLa-S3
3
HepG2
3
IMR-90
3
Jurkat
3
K562
3
MCF 10A
3
MM.1S
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
bipolar neuron
3
bronchial epithelial cell
3
cardiac fibroblast
3
dermis microvascular lymphatic vessel endothelial cell
3
endocrine pancreas
3
epithelial cell of proximal tubule
3
eye
3
frontal cortex
3
hepatic stellate cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
layer of hippocampus
3
left cardiac atrium
3
medulla oblongata
3
mesendoderm
3
mesodermal cell
3
midbrain
3
middle frontal gyrus
3
monocyte
3
occipital lobe
3
parathyroid adenoma
3
pons
3
prostate gland
3
retinal pigment epithelial cell
3
skeletal muscle cell
3
skeletal muscle tissue
3
smooth muscle cell of the brain vasculature
3
substantia nigra
3
superior temporal gyrus
3
suprapubic skin
3
temporal lobe
3
tongue
3
trophoblast
2
hindlimb muscle
2
muscle of leg
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG10803
2
BJAB cell
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caki2
2
Daoy
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM13976
2
GM13977
2
GM20000
2
GM23248
2
H1-hESC
2
H4
2
H7-hESC
2
HCT-116 cell
2
HL-60
2
HUES6
2
Ishikawa
2
KARPAS-422 cell
2
KBM-7
2
L1-S8
2
LHCN-M2
2
LoVo cell
2
M059J
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
NAMALWA
2
NCCIT cell
2
PC-3
2
Panc1
2
RCC 7860
2
RKO
Organ
7
connective tissue
Life stage
1
adult
1
unknown
Date released
4
May, 2021
September, 2022
2
February, 2021
1
June, 2020
Software used
4
abc
2
encode-ccres
1
macs
Lab
4
Jesse Engreitz, Stanford University
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
biosample_term_name!
mammary gland epithelial cell
month_released!
September, 2022
Showing 7 of 7 results
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Download
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP