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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
accessible chromatin
Annotation Category
4
Target gene links
3
cis-regulatory elements
Annotation type Category
14
ChIP-seq
11
DNase-seq
7
ATAC-seq
4
H3K27ac ChIP-Seq
1
RNA-seq
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
10
neural progenitor cell
7
adipocyte
6
dendritic cell
6
embryonic stem cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
adipose-derived stem cell
2
differentiating adipose-derived stem cell
1
Adipose SGBS cell line (adipocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
bipolar neuron
1
cardiac muscle cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
excitatory neuron
1
hippocampal neuron
1
lower motor neuron
1
mesenchymal stem cell
1
mesendoderm
1
myotube
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
skeletal muscle myoblast
1
trophoblast cell
Organ
7
connective tissue
Date released
4
May, 2021
1
February, 2024
1
November, 2022
1
October, 2019
Software used
4
abc
3
macs
Lab
4
Jesse Engreitz, Stanford University
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
biosample_term_name!
pituitary stalk
Showing 7 of 7 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP