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Schema
Citing CMDGA
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Annotation type
1
candidate regulatory elements
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
RNA-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
102
monocyte
23
retina
20
pigmented layer of retina
19
CD8-positive, alpha-beta T cell
18
hepatocyte
17
subcutaneous adipose tissue
16
epithelial cell of proximal tubule
16
islet of Langerhans
14
endothelial cell of hepatic sinusoid
13
glomerular endothelial cell
12
omental fat pad
12
tibial nerve
10
body of pancreas
10
common myeloid progenitor, CD34-positive
10
liver
9
ascending aorta
9
caudate nucleus
9
endothelial cell
9
heart left ventricle
8
CD4-positive, alpha-beta T cell
8
coronary artery
8
hematopoietic multipotent progenitor cell
8
pancreas
8
putamen
8
right atrium auricular region
8
spleen
8
substantia nigra
8
tibial artery
7
Ammon's horn
7
adrenal gland
7
cerebellum
7
kidney loop of Henle thin ascending limb epithelial cell
7
stomach
6
T-helper 1 cell
6
adipose tissue
6
frontal cortex
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
regulatory T cell
6
right lobe of liver
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
B cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
aorta
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
glomerular visceral epithelial cell
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
natural killer cell
5
neutrophil
5
nucleus accumbens
5
pancreatic alpha cell
5
pancreatic beta cell
5
subcutaneous abdominal adipose tissue
5
temporal lobe
4
MCF-7
4
Peyer's patch
4
T-helper 17 cell
4
angular gyrus
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
glutamatergic neuron
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
kidney interstitial cell
4
lower leg skin
4
ovary
4
peripheral blood mononuclear cell
4
sigmoid colon
4
thyroid gland
4
transverse colon
4
upper lobe of left lung
3
A549
3
CD14-positive monocyte
3
Cycling Mononuclear Phagocyte
3
MCF 10A
3
Mast Cell
3
adult endothelial progenitor cell
3
alternatively activated macrophage
3
breast epithelium
3
endocrine pancreas
3
esophagus muscularis mucosa
3
globus pallidus
3
hepatic stellate cell
3
kidney
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
layer of hippocampus
3
lung
3
macrophage
3
mesangial cell
3
middle frontal gyrus
3
pancreatic delta cell
3
pancreatic polypeptide-secreting cell
3
parathyroid adenoma
3
psoas muscle
3
right cardiac atrium
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
suprapubic skin
3
testis
3
thoracic aorta
3
uterus
vagina
3
visceral abdominal adipose tissue
2
cardiac fibroblast
2
AG10803
2
CD14-positive, CD16-negative classical monocyte
2
GM12878
2
HeLa-S3
2
Kupffer cell
2
LNCAP
2
T-cell
2
adipocyte
2
articular chondrocyte
2
blood
2
cardiomyocytes (cardiac muscle cell)
2
cerebellar cortex
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
duodenal mucosa
2
esophagus
2
fibroblast
2
fibroblast of breast
2
fibroblast of lung
2
gamma-delta T cell
2
heart
2
heart right ventricle
2
kidney inner medulla collecting duct intercalated cell
Organ
2
connective tissue
Life stage
2
adult
1
unknown
Date released
September, 2022
2
February, 2021
Software used
1
encode-ccres
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
vagina
month_released!
September, 2022
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP