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Schema
Citing CMDGA
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Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
DNase-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
4
primary cell
1
cell line
Biosample term
10
neural progenitor cell
6
embryonic stem cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
4
adipocyte
2
B cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
adipose-derived stem cell
2
differentiating adipose-derived stem cell
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
bipolar neuron
1
cardiac muscle cell
1
cardiac precursors
1
dermis microvascular lymphatic vessel endothelial cell
1
erythroid cell
1
excitatory neuron
1
foreskin keratinocyte
1
foreskin melanocyte
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
iPS DF 4.7 Cell Line
1
lower motor neuron
1
mammary gland epithelial cell
1
mesenchymal stem cell
1
mesendoderm
1
natural killer cell
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
olfactory neurosphere cell line
1
renal cell carcinoma
1
skin fibroblast
Organ
4
connective tissue
Date released
1
February, 2024
1
June, 2020
1
November, 2022
1
October, 2019
Software used
4
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP