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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
57
heart
57
stomach
54
A549
48
brain
48
lung
48
muscle of arm
45
small intestine
42
adrenal gland
42
kidney
42
placenta
39
left lung
39
muscle of back
39
muscle of leg
38
large intestine
33
right lung
33
thymus
30
common myeloid progenitor, CD34-positive
30
right kidney
27
hematopoietic multipotent progenitor cell
27
left kidney
27
renal cortex interstitium
27
renal pelvis
21
liver
21
spinal cord
18
B cell
18
K562
18
adipose tissue
18
spleen
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
heart left ventricle
15
mononuclear cell
15
sigmoid colon
15
trophoblast cell
12
body of pancreas
12
chorionic villus
12
foreskin keratinocyte
12
gastrocnemius medialis
12
muscle of trunk
12
neural progenitor cell
12
ovary
12
psoas muscle
12
thyroid gland
12
transverse colon
9
CD14-positive monocyte
9
CD4-positive, alpha-beta memory T cell
9
HeLa-S3
9
Peyer's patch
9
T cell
9
caudate nucleus
9
endocrine pancreas
9
endometrium adenocarcinoma
9
heart right ventricle
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
natural killer cell
9
neurosphere
9
retina
9
testis
9
tibial nerve
9
upper lobe of left lung
7
HepG2
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
6
T-helper 1 cell
6
T-helper 2 cell
6
T47D
6
angular gyrus
6
aorta
6
ascending aorta
6
breast epithelium
6
cerebellum
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
endothelial cell of umbilical vein
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
foreskin fibroblast
6
frontal cortex
6
kidney tubule cell
6
left renal cortex interstitium
6
left renal pelvis
6
limb
6
lower leg skin
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
omental fat pad
6
pancreas
6
parathyroid adenoma
6
prostate gland
6
regulatory T cell
6
right atrium auricular region
6
right renal cortex interstitium
6
right renal pelvis
6
skeletal muscle tissue
6
skin fibroblast
6
stomach smooth muscle
6
substantia nigra
6
temporal lobe
6
thoracic aorta
6
tibial artery
6
tongue
6
trophoblast
6
urinary bladder
6
vagina
3
8988T
3
A172
3
A673
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
C4-2B
3
CMK
3
COLO829
3
Caco-2 cell
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM04503
3
GM04504
3
GM08714
3
GM10248
3
GM10266
3
GM12875
3
GM12878
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
H1-hESC
3
H4
3
H54
3
H7-hESC
3
H9
3
HAP-1
3
HCT116
3
HEK293
3
HEK293T
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HTR-8/Svneo
3
HUES48
3
HUES6
3
HUES64
3
HuH-7
3
HuH-7.5
3
IMR-90
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
LHCN-M2
3
LoVo cell
3
Loucy
3
M059J
3
MG63
3
MM.1S
3
NB4
3
NCI-H226 cell
Organ
3
connective tissue
Life stage
3
adult
unknown
Date released
4
August, 2017
4
February, 2021
4
February, 2024
4
May, 2021
3
September, 2022
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
H1-hESC
relevant_life_stage!
unknown
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP