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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
gene expression
2
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
2
Target gene links
Annotation type Category
6
ChIP-seq
6
DNase-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
60
stomach
59
heart
50
kidney
50
lung
49
muscle of arm
46
brain
44
small intestine
43
adrenal gland
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
large intestine
40
muscle of leg
40
placenta
39
A549
39
left lung
33
right lung
31
thymus
30
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
left kidney
24
B cell
23
CD4-positive, alpha-beta memory T cell
22
liver
22
spleen
20
spinal cord
19
epithelial cell of proximal tubule
17
glomerular endothelial cell
17
heart left ventricle
16
T-helper 1 cell
16
adipose tissue
16
neural progenitor cell
15
CD8-positive, alpha-beta memory T cell
15
T-helper 17 cell
15
foreskin keratinocyte
15
monocyte
15
regulatory T cell
15
sigmoid colon
14
MCF-7
14
body of pancreas
14
trophoblast cell
13
K562
13
hepatocyte
13
islet of Langerhans
13
mononuclear cell
13
ovary
12
CD14-positive monocyte
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
transverse colon
11
T-helper 2 cell
11
cardiomyocytes
11
endocrine pancreas
11
natural killer cell
11
psoas muscle
11
thyroid gland
10
CD8-positive, alpha-beta T cell
10
H1-hESC
10
Peyer's patch
10
endothelial cell
10
heart right ventricle
10
neurosphere
10
retina
10
skeletal muscle tissue
10
testis
10
tibial nerve
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
fibroblast of lung
9
foreskin fibroblast
9
induced pluripotent stem cell
9
layer of hippocampus
9
omental fat pad
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
9
upper lobe of left lung
8
CD4-positive, alpha-beta T cell
8
EndoC_BH1
8
H9
8
HeLa-S3
8
T cell
8
adipocyte
8
dermis blood vessel endothelial cell
8
endothelial cell of umbilical vein
8
esophagus squamous epithelium
8
glomerular visceral epithelial cell
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
right renal pelvis
7
aorta
7
ascending aorta
7
breast epithelium
7
cardiac muscle cell
7
cerebellum
7
esophagus muscularis mucosa
7
fibroblast of dermis
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesenchymal stem cell
7
pancreas
7
parathyroid adenoma
7
temporal lobe
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
angular gyrus
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
frontal cortex
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
kidney interstitial cell
6
kidney tubule cell
6
mammary gland epithelial cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
prostate gland
6
right atrium auricular region
6
skeletal muscle myoblast
6
substantia nigra
6
tibial artery
5
LNCaP clone FGC
5
T47D
5
foreskin melanocyte
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
limb
5
mesangial cell
5
mesodermal cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neural cell
5
osteoblast
5
pancreatic stellate cell
5
right renal cortex interstitium
5
skeletal muscle satellite cell
5
smooth muscle cell
5
stomach smooth muscle
5
subcutaneous adipose tissue
5
thoracic aorta
5
tongue
5
trophoblast
5
vagina
4
Ammon's horn
4
Brodmann (1909) area 46
4
HEK293
4
NAMALWA cell
4
T-cell
4
astrocyte
4
bone tissue
4
cardiac fibroblast
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
dermis lymphatic vessel endothelial cell
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney epithelial cell
4
kidney glomerular epithelial cell
4
left cardiac atrium
4
lung microvascular endothelial cell
4
muscle cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
urinary bladder
3
A172
3
A673
3
ACC112
3
ACHN
Organ
8
connective tissue
Life stage
4
adult
3
unknown
Date released
4
September, 2022
3
February, 2021
1
February, 2024
Software used
8
macs
6
chromhmm
6
r
4
abc
2
encode-ccres
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
Showing 8 of 8 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP