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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
18
chromatin state
16
target gene predictions
4
eQTL
4
histone modifications
3
accessible chromatin
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
DNase-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
20
fibroblast
18
monocyte
16
endothelial cell
15
macrophage
13
excitatory neuron
11
kidney
10
neural progenitor cell
10
pericyte cell
10
smooth muscle cell
9
EndoC_BH1
9
retinal pigment epithelial cell
8
B cell
8
T cell
8
astrocyte
8
pancreatic ductal cell
7
adipocyte
7
pancreatic acinar cell
7
skeletal muscle fiber
6
SGBS preadipocytes
6
embryonic stem cell
6
enterocyte
6
heart
6
pancreatic beta cell
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
erythroblast
5
hepatocyte
5
inhibitory neuron
5
pancreatic alpha cell
5
regulatory T cell
5
skeletal muscle satellite cell
5
type II pneumocyte
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
basal cell
4
cardiac muscle cell
4
coronary artery
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
memory B cell
4
myofibroblast cell
4
natural killer cell
4
osteoblast
4
pancreatic delta cell
4
right atrium auricular region
4
tibial artery
3
cardiac fibroblast
3
Schwann cell
3
T-helper 1 cell
3
adipose tissue
3
brain
3
brain pericyte
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
goblet cell
3
keratinocyte
3
liver
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mesothelial cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic stellate cell
3
renal cortical epithelial cell
3
renal pelvis
3
retina
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
CD4-positive helper T cell
2
MIN6
2
Muller cell
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
gabaergic neuron
2
gamma-delta T cell
2
glial cell
2
glutamatergic neuron
2
heart left ventricle
2
heart right ventricle
2
hepatic stellate cell
2
islet of Langerhans
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
muscle of arm
2
muscle of leg
2
naive regulatory T cell
2
naive t cell
2
occipital lobe
2
oligodendrocyte precursor cell
2
pancreas
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
renal cortex interstitium
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
schwann cell
2
skeletal muscle cell
2
smooth muscle cell of the brain vasculature
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
subcutaneous adipose tissue
2
thoracic aorta
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
786-O cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
Organ
4
brain
Life stage
adult
1
fetal
Date released
2
June, 2020
1
January, 2020
1
May, 2020
Software used
3
macs
1
deltasvm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
relevant_life_stage!
adult
Showing 4 of 4 results
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Download
FileSet
DSR509CLD
released
Annotation file set
: Accessible chromatin annotation for Neural Putamen from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154FEP
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP