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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
18
chromatin state
16
target gene predictions
3
histone modifications
2
accessible chromatin
2
eQTL
1
binding sites
1
gene expression
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
DNase-seq
1
ChIP-seq
1
RNA-seq
Available data
3
bed bed3+
1
bigWig
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
34
monocyte
28
endothelial cell
25
retina
22
hepatocyte
21
neural progenitor cell
20
islet of Langerhans
20
pigmented layer of retina
18
epithelial cell of proximal tubule
18
fibroblast
18
kidney
17
EndoC_BH1
16
endothelial cell of hepatic sinusoid
16
glomerular endothelial cell
16
macrophage
16
pancreatic ductal cell
14
excitatory neuron
13
regulatory T cell
11
H1-hESC
11
cardiomyocytes
11
pancreatic beta cell
11
retinal pigment epithelial cell
10
B cell
10
T-helper 1 cell
10
embryonic stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pericyte cell
10
smooth muscle cell
9
T-helper 17 cell
9
adipocyte
9
astrocyte
9
breast cancer cell
9
extended pluripotent stem (EPS) cells
9
heart
9
induced pluripotent stem cell
9
osteoblast
9
progenitor cell of endocrine pancreas
8
CD8-positive, alpha-beta T cell
8
glomerular visceral epithelial cell
8
pancreatic delta cell
7
T cell
7
erythroblast
7
fibroblast cell line
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
melanoma
7
memory B cell
7
mesangial cell
6
SGBS preadipocytes
6
adipose tissue
6
chondrocyte
6
gamma-delta T cell
6
glutamatergic neuron
6
keratinocyte
6
liver
6
natural killer cell
6
pancreas
6
skeletal muscle fiber
6
skeletal muscle satellite cell
5
HepG2
5
T-helper 2 cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
hepatic stellate cell
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mammary epithelial cell
5
mesenchymal stem cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
subcutaneous adipose tissue
4
MCF-7
4
Rh-4 cell
4
T follicular helper cell
4
acute myeloid leukemia
4
bone tissue
4
brain
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
choroid plexus epithelial cell
4
coronary artery
4
dermal fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of umbilical vein
4
frontal cortex
4
glial cell
4
glioblastoma multiforme cancer stem cell
4
heart left ventricle
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mammary gland epithelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic stellate cell
4
prostate cancer cell line
4
tibial nerve
3
cardiac fibroblast
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
ECC-1
3
Fibroblast
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
Glomerular Capillary Endothelial Cell
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
IMR-90
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Jurkat
3
K562
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
NHEK
3
NT2-D1 cell
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Normal Human Astrocytes
3
PANC-1 cell
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
RS4-11 cell
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
T Cell
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
3
Th1 cell
3
Transitional Principal-Intercalated Cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
Vascular Smooth Muscle Cell / Pericyte
Organ
4
brain
Life stage
2
fetal
Date released
1
February, 2020
1
February, 2021
1
January, 2020
1
June, 2020
Software used
3
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR133CLX
released
Annotation file set
: Binding sites annotation for Neural Fetal_brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP