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Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
17
target gene predictions
9
accessible chromatin
4
histone modifications
3
binding sites
3
chromatin state
2
variant allelic effects
1
eQTL
1
sQTL
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
18
bed bed9
3
bed bed3+
3
bigBed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
5
left cardiac atrium
4
adipocyte
3
islet of Langerhans
2
ESC derived cell line
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
keratinocyte
1
layer of hippocampus
1
liver
1
mammary epithelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
pancreas
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Organ
3
pancreas
Date released
2
August, 2017
1
April, 2019
Software used
3
chromhmm
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP