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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
candidate regulatory elements
3
chromatin state
2
accessible chromatin
2
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
3
bed bed9
2
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
tissue
4
primary cell
1
in vitro differentiated cells
Biosample term
19
A549
18
monocyte
16
B cell
16
fibroblast
15
endothelial cell
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
macrophage
12
adipocyte
11
T cell
11
embryonic stem cell
11
hematopoietic multipotent progenitor cell
11
pericyte cell
10
hepatocyte
10
retinal pigment epithelial cell
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
8
EndoC_BH1
8
K562
8
pancreatic beta cell
8
regulatory T cell
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
7
erythroblast
7
fibroblast of cardiac tissue
7
mature neutrophil
7
natural killer cell
7
pancreatic alpha cell
7
skeletal muscle satellite cell
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
mesenchymal stem cell
6
mononuclear cell
6
osteoblast
6
pancreatic acinar cell
6
pancreatic ductal cell
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
foreskin keratinocyte
5
inhibitory neuron
5
keratinocyte
5
mammary gland epithelial cell
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
skin fibroblast
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
HepG2
4
alternatively activated macrophage
4
colon epithelial cell
4
fibroblast of lung
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney tubule cell
4
memory B cell
4
type II pneumocyte
3
cardiac fibroblast
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
bronchial epithelial cell
3
cardiac muscle cell
3
choroid plexus epithelial cell
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
fibroblast of dermis
3
foreskin fibroblast
3
gabaergic neuron
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
luminal epithelial cell of mammary gland
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
renal cortical epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
2
HUES6
2
HuH-7
2
IMR-90
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
M059J
2
MG63
2
MM.1S
2
Muller cell
2
NCI-H226 cell
2
NT2-D1 cell
2
OCI-LY7
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SK-N-SH
2
SUDHL5
2
SW480
2
T follicular helper cell
2
T47D
2
U-266 cell
2
WERI-Rb-1
2
Z-138
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain microvascular endothelial cell
2
brain pericyte
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endodermal cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of mammary gland
Organ
5
epithelium
5
mammary gland
Life stage
2
adult
1
unknown
Date released
3
September, 2022
1
June, 2020
1
November, 2021
Software used
3
chromhmm
2
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
biosample_type!
tissue
Showing 5 of 5 results
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Download
FileSet
DSR267DXB
released
Annotation file set
: Chromatin states for BSS01213 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR285UOJ
released
Annotation file set
: Chromatin states for BSS01211 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887SUU
released
Annotation file set
: Chromatin states for BSS01209 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR492XEZ
released
Annotation file set
: Accessible chromatin annotation of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR534MWT
released
Annotation file set
: Accessible chromatin annotation for Breast Breast cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP